RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 EIF6P56537 245 aaKnown RBP17.07■□□□□ 0.32
SF3B3-202ENST00000562722 RIPK4P57078 832 aa17.07■□□□□ 0.32
SF3B3-202ENST00000562722 CC2D2BQ6DHV5 1058 aa17.07■□□□□ 0.32
SF3B3-202ENST00000562722 PSMD1Q99460 953 aa17.07■□□□□ 0.32
SF3B3-202ENST00000562722 GJA3Q9Y6H8 435 aa17.07■□□□□ 0.32
SF3B3-202ENST00000562722 SCN4AP35499 1836 aa17.07■□□□□ 0.32
SF3B3-202ENST00000562722 FZD9O00144 591 aa17.06■□□□□ 0.32
SF3B3-202ENST00000562722 PPEF1O14829 653 aaPredicted RBP17.06■□□□□ 0.32
SF3B3-202ENST00000562722 GIGYF2Q6Y7W6 1299 aaKnown RBP17.06■□□□□ 0.32
SF3B3-202ENST00000562722 PPP1R42Q7Z4L9 355 aa17.06■□□□□ 0.32
SF3B3-202ENST00000562722 PNMA8AQ86V59 439 aaPredicted RBP17.06■□□□□ 0.32
SF3B3-202ENST00000562722 ZNF34Q8IZ26 560 aa17.06■□□□□ 0.32
SF3B3-202ENST00000562722 GPC2Q8N158 579 aa17.06■□□□□ 0.32
SF3B3-202ENST00000562722 TMX4Q9H1E5 349 aaPredicted RBP17.06■□□□□ 0.32
SF3B3-202ENST00000562722 PASKQ96RG2 1323 aa17.05■□□□□ 0.32
SF3B3-202ENST00000562722 HOXA10P31260 410 aaPredicted RBP17.05■□□□□ 0.32
SF3B3-202ENST00000562722 PARP10Q53GL7 1025 aa17.05■□□□□ 0.32
SF3B3-202ENST00000562722 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
SF3B3-202ENST00000562722 NUP98P52948 1817 aa17.05■□□□□ 0.32
SF3B3-202ENST00000562722 RIC1Q4ADV7 1423 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 TMEM88BA6NKF7 163 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 NTSR2O95665 410 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 LMOD1P29536 600 aaPredicted RBP17.04■□□□□ 0.32
SF3B3-202ENST00000562722 LMOD3Q0VAK6 560 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 GRIPAP1Q4V328 841 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 NLRP3Q96P20 1036 aa17.04■□□□□ 0.32
SF3B3-202ENST00000562722 CNTNAP1P78357 1384 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 ANXA1P04083 346 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 RALBP1Q15311 655 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 MAP1SQ66K74 1059 aaPredicted RBP17.03■□□□□ 0.32
SF3B3-202ENST00000562722 C3orf67Q6ZVT6 689 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 NECTIN2Q92692 538 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 CRAMP1Q96RY5 1269 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 UTP14AQ9BVJ6 771 aaKnown RBP17.03■□□□□ 0.32
SF3B3-202ENST00000562722 PCNTO95613 3336 aa17.03■□□□□ 0.32
SF3B3-202ENST00000562722 ITGBL1O95965 494 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-202ENST00000562722 AIMP1Q12904 312 aaKnown RBP17.02■□□□□ 0.32
SF3B3-202ENST00000562722 PROSER3Q2NL68 480 aa17.02■□□□□ 0.32
SF3B3-202ENST00000562722 NIM1KQ8IY84 436 aa17.02■□□□□ 0.32
SF3B3-202ENST00000562722 CNTROBQ8N137 903 aa17.02■□□□□ 0.32
SF3B3-202ENST00000562722 SNED1Q8TER0 1413 aa17.02■□□□□ 0.31
SF3B3-202ENST00000562722 TMPOP42166 694 aaKnown RBP17.01■□□□□ 0.31
SF3B3-202ENST00000562722 PDIA6Q15084 440 aa17.01■□□□□ 0.31
SF3B3-202ENST00000562722 NEUROD2Q15784 382 aa17.01■□□□□ 0.31
SF3B3-202ENST00000562722 SLC51AQ86UW1 340 aa17.01■□□□□ 0.31
SF3B3-202ENST00000562722 AIDAQ96BJ3 306 aa17.01■□□□□ 0.31
SF3B3-202ENST00000562722 BABAM1Q9NWV8 329 aa17.01■□□□□ 0.31
SF3B3-202ENST00000562722 LAS1LQ9Y4W2 734 aaKnown RBP17.01■□□□□ 0.31
SF3B3-202ENST00000562722 PPIP5K2O43314 1243 aa17■□□□□ 0.31
SF3B3-202ENST00000562722 HSP90AB3PQ58FF7 597 aa17■□□□□ 0.31
SF3B3-202ENST00000562722 CCDC146Q8IYE0 955 aa17■□□□□ 0.31
SF3B3-202ENST00000562722 ABT1Q9ULW3 272 aaKnown RBP17■□□□□ 0.31
SF3B3-202ENST00000562722 VEGFBP49765 207 aa16.99■□□□□ 0.31
SF3B3-202ENST00000562722 COPS6Q7L5N1 327 aa16.99■□□□□ 0.31
SF3B3-202ENST00000562722 XAGE3Q8WTP9 111 aa16.99■□□□□ 0.31
SF3B3-202ENST00000562722 COL4A5P29400 1685 aa16.99■□□□□ 0.31
SF3B3-202ENST00000562722 WDR43Q15061 677 aaKnown RBP eCLIP16.98■□□□□ 0.31
SF3B3-202ENST00000562722 AOC3Q16853 763 aa16.98■□□□□ 0.31
SF3B3-202ENST00000562722 LRP10Q7Z4F1 713 aa16.98■□□□□ 0.31
SF3B3-202ENST00000562722 ATP6V0A2Q9Y487 856 aa16.98■□□□□ 0.31
SF3B3-202ENST00000562722 ABCC4O15439 1325 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 FOXN1O15353 648 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 HCLS1P14317 486 aaPredicted RBP16.97■□□□□ 0.31
SF3B3-202ENST00000562722 EPS15P42566 896 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 SLC10A5Q5PT55 438 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 NLRP10Q86W26 655 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 SUPT20HQ8NEM7 779 aa16.97■□□□□ 0.31
SF3B3-202ENST00000562722 TRMT112Q9UI30 125 aaKnown RBP16.97■□□□□ 0.31
SF3B3-202ENST00000562722 MYBBP1AQ9BQG0 1328 aaKnown RBP16.96■□□□□ 0.31
SF3B3-202ENST00000562722 SCNN1DP51172 638 aa16.96■□□□□ 0.31
SF3B3-202ENST00000562722 DDX10Q13206 875 aaKnown RBP16.96■□□□□ 0.31
SF3B3-202ENST00000562722 DEFB115Q30KQ5 88 aa16.96■□□□□ 0.31
SF3B3-202ENST00000562722 DPP8Q6V1X1 898 aaPredicted RBP16.96■□□□□ 0.31
SF3B3-202ENST00000562722 PAXIP1Q6ZW49 1069 aaPredicted RBP16.96■□□□□ 0.31
SF3B3-202ENST00000562722 DDX46Q7L014 1031 aaKnown RBP16.96■□□□□ 0.31
SF3B3-202ENST00000562722 BBOX1O75936 387 aa16.95■□□□□ 0.3
SF3B3-202ENST00000562722 KRT24Q2M2I5 525 aa16.95■□□□□ 0.3
SF3B3-202ENST00000562722 ZNF428Q96B54 188 aa16.95■□□□□ 0.3
SF3B3-202ENST00000562722 DDX21Q9NR30 783 aaKnown RBP eCLIP16.95■□□□□ 0.3
SF3B3-202ENST00000562722 SH3TC1Q8TE82 1336 aa16.95■□□□□ 0.3
SF3B3-202ENST00000562722 CTCFP49711 727 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-202ENST00000562722 TCIRG1Q13488 830 aa16.94■□□□□ 0.3
SF3B3-202ENST00000562722 USP50Q70EL3 339 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-202ENST00000562722 MPNDQ8N594 471 aa16.94■□□□□ 0.3
SF3B3-202ENST00000562722 VPS33BQ9H267 617 aa16.94■□□□□ 0.3
SF3B3-202ENST00000562722 CHPF2Q9P2E5 772 aa16.94■□□□□ 0.3
SF3B3-202ENST00000562722 ZNRF3Q9ULT6 936 aa16.94■□□□□ 0.3
SF3B3-202ENST00000562722 LTBP1Q14766 1721 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 RASSF10A6NK89 507 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 CHL1O00533 1208 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 GRM1Q13255 1194 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 HDGFL1Q5TGJ6 251 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 SP8Q8IXZ3 490 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 RUNDC1Q96C34 613 aa16.93■□□□□ 0.3
SF3B3-202ENST00000562722 GRAPQ13588 217 aa16.92■□□□□ 0.3
SF3B3-202ENST00000562722 GRAPLQ8TC17 118 aaPredicted RBP16.92■□□□□ 0.3
SF3B3-202ENST00000562722 BCL2L13Q9BXK5 485 aa16.92■□□□□ 0.3
SF3B3-202ENST00000562722 ADARB2Q9NS39 739 aaKnown RBP16.92■□□□□ 0.3
SF3B3-202ENST00000562722 GPRC5DQ9NZD1 345 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms