RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 RNF217Q8TC41 542 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 TRIM47Q96LD4 638 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 SENP2Q9HC62 589 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 DNMT3LQ9UJW3 386 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 USP3Q9Y6I4 520 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 SETD1BQ9UPS6 1966 aaKnown RBP6.49□□□□□ -1.37
SPG11-211ENST00000558561 DAPK1P53355 1430 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 ARHGEF5Q12774 1597 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 REREQ9P2R6 1566 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 TCOF1Q13428 1488 aaKnown RBP6.48□□□□□ -1.37
SPG11-211ENST00000558561 C11orf95C9JLR9 678 aaPredicted RBP6.48□□□□□ -1.37
SPG11-211ENST00000558561 MAN1A2O60476 641 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 GPC1P35052 558 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 EPHA4P54764 986 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 POU4F2Q12837 409 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 ZSCAN10Q96SZ4 725 aaPredicted RBP6.48□□□□□ -1.37
SPG11-211ENST00000558561 SCHIP1Q9P0W5 487 aaPredicted RBP6.48□□□□□ -1.37
SPG11-211ENST00000558561 PLXNC1O60486 1568 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 WASHC2CQ9Y4E1 1318 aa6.48□□□□□ -1.37
SPG11-211ENST00000558561 M0R2N6 131 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 CDK2AP1O14519 115 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 CSB-PGBD3P0DP91 1061 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 RHOQP17081 205 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 FOXK2Q01167 660 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 MTFR1Q15390 333 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 TMEM214Q6NUQ4 689 aaKnown RBP6.47□□□□□ -1.37
SPG11-211ENST00000558561 RETREG2Q8NC44 543 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 KIFC2Q96AC6 838 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 SLAIN2Q9P270 581 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 IQSEC3Q9UPP2 1182 aaPredicted RBP6.47□□□□□ -1.37
SPG11-211ENST00000558561 NCOA1Q15788 1441 aa6.47□□□□□ -1.37
SPG11-211ENST00000558561 TMEM88BA6NKF7 163 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 PHKA2P46019 1235 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 LYSMD3Q7Z3D4 306 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 SLC9A9Q8IVB4 645 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 PRIMPOLQ96LW4 560 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 TSPAN10Q9H1Z9 355 aaPredicted RBP6.46□□□□□ -1.38
SPG11-211ENST00000558561 STRCQ7RTU9 1775 aa6.46□□□□□ -1.38
SPG11-211ENST00000558561 KIF15Q9NS87 1388 aa6.45□□□□□ -1.38
SPG11-211ENST00000558561 MAST1Q9Y2H9 1570 aa6.45□□□□□ -1.38
SPG11-211ENST00000558561 C21orf2O43822 256 aa6.45□□□□□ -1.38
SPG11-211ENST00000558561 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.45□□□□□ -1.38
SPG11-211ENST00000558561 ZNF295-AS1Q8N0V1 137 aa6.45□□□□□ -1.38
SPG11-211ENST00000558561 SCG3Q8WXD2 468 aaKnown RBP6.45□□□□□ -1.38
SPG11-211ENST00000558561 PARP3Q9Y6F1 533 aa6.45□□□□□ -1.38
SPG11-211ENST00000558561 DNMT1P26358 1616 aaKnown RBP6.45□□□□□ -1.38
SPG11-211ENST00000558561 ATAD2Q6PL18 1390 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 MROH1Q8NDA8 1641 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 SPATA31C2B4DYI2 1134 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 PRMT3O60678 531 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 GTF2E1P29083 439 aaPredicted RBP6.44□□□□□ -1.38
SPG11-211ENST00000558561 C4orf17Q53FE4 359 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 GNASQ5JWF2 1037 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 ZNF787Q6DD87 383 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 NBPF10Q6P3W6 841 aaKnown RBP6.44□□□□□ -1.38
SPG11-211ENST00000558561 NBPF15Q8N660 670 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 CEP152O94986 1710 aa6.44□□□□□ -1.38
SPG11-211ENST00000558561 WEE1P30291 646 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 IDI1Q13907 227 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 SWI5Q1ZZU3 235 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 TAS1R3Q7RTX0 852 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 RHBDD1Q8TEB9 315 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 ZDHHC1Q8WTX9 485 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 NIFKQ9BYG3 293 aaKnown RBP6.43□□□□□ -1.38
SPG11-211ENST00000558561 CABP1Q9NZU7 370 aa6.43□□□□□ -1.38
SPG11-211ENST00000558561 CROCC2H7BZ55 1655 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 PPP1R12BO60237 982 aaPredicted RBP6.42□□□□□ -1.38
SPG11-211ENST00000558561 LTKP29376 864 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 PTSQ03393 145 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 OCLNQ16625 522 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 SH3PXD2AQ5TCZ1 1133 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 CLP1Q92989 425 aaKnown RBP6.42□□□□□ -1.38
SPG11-211ENST00000558561 ANKRD30AQ9BXX3 1397 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 CNTLNQ9NXG0 1405 aa6.42□□□□□ -1.38
SPG11-211ENST00000558561 ABCC3O15438 1527 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 DUOX2Q9NRD8 1548 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 SENP3-EIF4A1A0A087X0R7 540 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 NOS2P35228 1153 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 PLA2G4AP47712 749 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 TEAD4Q15561 434 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 L3MBTL2Q969R5 705 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 AIDAQ96BJ3 306 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 TIMMDC1Q9NPL8 285 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 USTQ9Y2C2 406 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 PREX1Q8TCU6 1659 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 TNRQ92752 1358 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.41□□□□□ -1.38
SPG11-211ENST00000558561 UHRF1BP1Q6BDS2 1440 aa6.41□□□□□ -1.38
SPG11-211ENST00000558561 MROH2AA6NES4 1674 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 SERTM1A2A2V5 107 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 IGFBP4P22692 258 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 ATP2B4P23634 1241 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 SCNN1AP37088 669 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 PSMA6P60900 246 aaKnown RBP6.4□□□□□ -1.38
SPG11-211ENST00000558561 WDR44Q5JSH3 913 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 C2orf49Q9BVC5 232 aaPredicted RBP6.4□□□□□ -1.38
SPG11-211ENST00000558561 ZNF232Q9UNY5 417 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 HCN4Q9Y3Q4 1203 aa6.4□□□□□ -1.38
SPG11-211ENST00000558561 ANKRD50Q9ULJ7 1429 aa6.4□□□□□ -1.39
SPG11-211ENST00000558561 ADGRL2O95490 1459 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms