RNA–Protein interactions for RNA: ENST00000557554.5

ABCD4-227, Transcript of ATP binding cassette subfamily D member 4, human

TSL 4

Gene ABCD4, Length 523 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-227	ENST00000557554	IL17RE	Q8NFR9	667 aa		13.7	□□□□□ -0.22
ABCD4-227	ENST00000557554	HPS5	Q9UPZ3	1129 aa		13.7	□□□□□ -0.22
ABCD4-227	ENST00000557554	USP16	Q9Y5T5	823 aa		13.7	□□□□□ -0.22
ABCD4-227	ENST00000557554	RGL2	O15211	777 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	TRPA1	O75762	1119 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	HOXA10	P31260	410 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	CXCL9	Q07325	125 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	GRIPAP1	Q4V328	841 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	DLK2	Q6UY11	383 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	SLC51A	Q86UW1	340 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	NBPF15	Q8N660	670 aa		13.69	□□□□□ -0.22
ABCD4-227	ENST00000557554	HUNK	P57058	714 aa		13.68	□□□□□ -0.22
ABCD4-227	ENST00000557554	KIF23	Q02241	960 aa	Predicted RBP	13.68	□□□□□ -0.22
ABCD4-227	ENST00000557554	ZNF408	Q9H9D4	720 aa		13.68	□□□□□ -0.22
ABCD4-227	ENST00000557554	AKAP11	Q9UKA4	1901 aa		13.68	□□□□□ -0.22
ABCD4-227	ENST00000557554	HMOX1	P09601	288 aa		13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	PIP4K2A	P48426	406 aa	Predicted RBP	13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	RGMB	Q6NW40	437 aa		13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	NPM2	Q86SE8	214 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	CSRNP1	Q96S65	589 aa		13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	SIPA1L3	O60292	1781 aa	Predicted RBP	13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	MKI67	P46013	3256 aa	Known RBP	13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	NPC1L1	Q9UHC9	1359 aa		13.67	□□□□□ -0.22
ABCD4-227	ENST00000557554	KCNQ3	O43525	872 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	GMPS	P49915	693 aa	Predicted RBP	13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	NIM1K	Q8IY84	436 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	CCDC102A	Q96A19	550 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	FMNL2	Q96PY5	1086 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	VPS33B	Q9H267	617 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	ZNF652	Q9Y2D9	606 aa		13.66	□□□□□ -0.22
ABCD4-227	ENST00000557554	POLR2A	P24928	1970 aa	Known RBP	13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	NBPF26	B4DH59	902 aa		13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	FXR1	P51114	621 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	PKN2	Q16513	984 aa	Known RBP	13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	HLF	Q16534	295 aa		13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	NBPF10	Q6P3W6	841 aa	Known RBP	13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	USP48	Q86UV5	1035 aa		13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	MORC1	Q86VD1	984 aa		13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	ZNRF3	Q9ULT6	936 aa		13.65	□□□□□ -0.22
ABCD4-227	ENST00000557554	KIF7	Q2M1P5	1343 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	PRAMEF22	A3QJZ6	481 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	FAM177B	A6PVY3	158 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	AOC3	Q16853	763 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	TRPM4	Q8TD43	1214 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	PANK3	Q9H999	370 aa		13.64	□□□□□ -0.23
ABCD4-227	ENST00000557554	SHTN1	A0MZ66	631 aa		13.63	□□□□□ -0.23
ABCD4-227	ENST00000557554	CRAMP1	Q96RY5	1269 aa		13.63	□□□□□ -0.23
ABCD4-227	ENST00000557554	CDHR2	Q9BYE9	1310 aa		13.63	□□□□□ -0.23
ABCD4-227	ENST00000557554	ABCC12	Q96J65	1359 aa		13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	PPIP5K2	O43314	1243 aa		13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	TEF	Q10587	303 aa		13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	NUTM1	Q86Y26	1132 aa		13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	GBA2	Q9HCG7	927 aa	Predicted RBP	13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	CNOT7	Q9UIV1	285 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-227	ENST00000557554	CEMIP	Q8WUJ3	1361 aa		13.61	□□□□□ -0.23
ABCD4-227	ENST00000557554	GNAT3	A8MTJ3	354 aa		13.61	□□□□□ -0.23
ABCD4-227	ENST00000557554	ZNF157	P51786	506 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-227	ENST00000557554	SLC10A3	P09131	477 aa		13.6	□□□□□ -0.23
ABCD4-227	ENST00000557554	GTF2E1	P29083	439 aa	Predicted RBP	13.6	□□□□□ -0.23
ABCD4-227	ENST00000557554	RIC1	Q4ADV7	1423 aa		13.6	□□□□□ -0.23
ABCD4-227	ENST00000557554	C2orf69	Q8N8R5	385 aa		13.6	□□□□□ -0.23
ABCD4-227	ENST00000557554	SZT2	Q5T011	3432 aa		13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	TCERG1	O14776	1098 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	PPEF1	O14829	653 aa	Predicted RBP	13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	RAD17	O75943	681 aa		13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	REM2	Q8IYK8	340 aa	Predicted RBP	13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	RPGR	Q92834	1020 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	ATP6V0A2	Q9Y487	856 aa		13.59	□□□□□ -0.23
ABCD4-227	ENST00000557554	BTBD11	A6QL63	1104 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	YDJC	A8MPS7	323 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	TNIP1	Q15025	636 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	C3orf67	Q6ZVT6	689 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	KRT26	Q7Z3Y9	468 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	RBM17	Q96I25	401 aa	Known RBP	13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	BCL2L13	Q9BXK5	485 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	NYX	Q9GZU5	481 aa		13.58	□□□□□ -0.24
ABCD4-227	ENST00000557554	EGFR	P00533	1210 aa		13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	SNRPA1	P09661	255 aa	Known RBP	13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	KIAA2012	Q0VF49	1180 aa		13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	SAMD7	Q7Z3H4	446 aa		13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	MICALL2	Q8IY33	904 aa		13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	NUP98	P52948	1817 aa		13.57	□□□□□ -0.24
ABCD4-227	ENST00000557554	ERVV-1	B6SEH8	477 aa		13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554		H7C1D1	291 aa		13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554	NOM1	Q5C9Z4	860 aa	Known RBP	13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554	DPF2	Q92785	391 aa		13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554	POLR3GL	Q9BT43	218 aa		13.56	□□□□□ -0.24
ABCD4-227	ENST00000557554	ADM5	C9JUS6	153 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	TBC1D8	O95759	1140 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	SUSD4	Q5VX71	490 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	SUPT20H	Q8NEM7	779 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	HDAC9	Q9UKV0	1011 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	UBN2	Q6ZU65	1347 aa		13.55	□□□□□ -0.24
ABCD4-227	ENST00000557554	DIAPH1	O60610	1272 aa	Known RBP	13.54	□□□□□ -0.24
ABCD4-227	ENST00000557554	RASAL3	Q86YV0	1011 aa		13.54	□□□□□ -0.24

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