RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 ABCC12Q96J65 1359 aa16.01■□□□□ 0.15
SHMT2-214ENST00000554604 ZC3H4Q9UPT8 1303 aaKnown RBP16.01■□□□□ 0.15
SHMT2-214ENST00000554604 ALDH1B1P30837 517 aa16.01■□□□□ 0.15
SHMT2-214ENST00000554604 RPGRQ92834 1020 aaKnown RBP16.01■□□□□ 0.15
SHMT2-214ENST00000554604 TAOK3Q9H2K8 898 aa16.01■□□□□ 0.15
SHMT2-214ENST00000554604 HYPKQ9NX55 129 aa16.01■□□□□ 0.15
SHMT2-214ENST00000554604 ELL2O00472 640 aaPredicted RBP16■□□□□ 0.15
SHMT2-214ENST00000554604 KIF3CO14782 793 aa16■□□□□ 0.15
SHMT2-214ENST00000554604 NTSR2O95665 410 aa16■□□□□ 0.15
SHMT2-214ENST00000554604 UTP14AQ9BVJ6 771 aaKnown RBP16■□□□□ 0.15
SHMT2-214ENST00000554604 NMRK2Q9NPI5 230 aa16■□□□□ 0.15
SHMT2-214ENST00000554604 PRELPP51888 382 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 CRY2Q49AN0 593 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 CCDC93Q567U6 631 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 ERICH6BQ5W0A0 696 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 ANKRD13DQ6ZTN6 518 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 C16orf71Q8IYS4 520 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-214ENST00000554604 CHMP4AQ9BY43 222 aa15.99■□□□□ 0.15
SHMT2-214ENST00000554604 SALL2Q9Y467 1007 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-214ENST00000554604 LTBP3Q9NS15 1303 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 TCIRG1Q13488 830 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 CCDC27Q2M243 656 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 RIC1Q4ADV7 1423 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 WWC1Q8IX03 1113 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 PLBD2Q8NHP8 589 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 NLRP3Q96P20 1036 aa15.98■□□□□ 0.15
SHMT2-214ENST00000554604 RNF123Q5XPI4 1314 aa15.97■□□□□ 0.15
SHMT2-214ENST00000554604 NLRP10Q86W26 655 aa15.97■□□□□ 0.15
SHMT2-214ENST00000554604 C8orf58Q8NAV2 365 aa15.97■□□□□ 0.15
SHMT2-214ENST00000554604 C7orf43Q8WVR3 580 aa15.97■□□□□ 0.15
SHMT2-214ENST00000554604 RBM17Q96I25 401 aaKnown RBP15.97■□□□□ 0.15
SHMT2-214ENST00000554604 TRMT112Q9UI30 125 aaKnown RBP15.97■□□□□ 0.15
SHMT2-214ENST00000554604 LAMB2P55268 1798 aa15.97■□□□□ 0.15
SHMT2-214ENST00000554604 TOMM70O94826 608 aa15.96■□□□□ 0.15
SHMT2-214ENST00000554604 DPY19L2Q6NUT2 758 aa15.96■□□□□ 0.15
SHMT2-214ENST00000554604 RTKN2Q8IZC4 609 aa15.96■□□□□ 0.15
SHMT2-214ENST00000554604 TSR2Q969E8 191 aaKnown RBP15.96■□□□□ 0.15
SHMT2-214ENST00000554604 RRAGCQ9HB90 399 aa15.96■□□□□ 0.15
SHMT2-214ENST00000554604 GLTPD2A6NH11 291 aa15.95■□□□□ 0.14
SHMT2-214ENST00000554604 HOXA10P31260 410 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-214ENST00000554604 GOLGA2Q08379 1002 aa15.95■□□□□ 0.14
SHMT2-214ENST00000554604 CCDC30Q5VVM6 783 aa15.95■□□□□ 0.14
SHMT2-214ENST00000554604 RIC3Q7Z5B4 369 aa15.95■□□□□ 0.14
SHMT2-214ENST00000554604 ZNF428Q96B54 188 aa15.95■□□□□ 0.14
SHMT2-214ENST00000554604 SH3TC1Q8TE82 1336 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 CEP350Q5VT06 3117 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 FKBP4Q02790 459 aaKnown RBP eCLIP15.94■□□□□ 0.14
SHMT2-214ENST00000554604 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
SHMT2-214ENST00000554604 SLC10A5Q5PT55 438 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 OLFM4Q6UX06 510 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 CRAMP1Q96RY5 1269 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 TMX4Q9H1E5 349 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-214ENST00000554604 CACNA1FO60840 1977 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 IL16Q14005 1332 aa15.94■□□□□ 0.14
SHMT2-214ENST00000554604 ATP5J2-PTCD1G3V325 749 aa15.93■□□□□ 0.14
SHMT2-214ENST00000554604 HCLS1P14317 486 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-214ENST00000554604 CC2D2BQ6DHV5 1058 aa15.93■□□□□ 0.14
SHMT2-214ENST00000554604 C3orf67Q6ZVT6 689 aa15.93■□□□□ 0.14
SHMT2-214ENST00000554604 PHAXQ9H814 394 aaKnown RBP15.93■□□□□ 0.14
SHMT2-214ENST00000554604 TCERG1O14776 1098 aaKnown RBP15.92■□□□□ 0.14
SHMT2-214ENST00000554604 PPEF1O14829 653 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-214ENST00000554604 DDX58O95786 925 aaKnown RBP15.92■□□□□ 0.14
SHMT2-214ENST00000554604 VEGFAP15692 232 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-214ENST00000554604 HSPA6P17066 643 aa15.92■□□□□ 0.14
SHMT2-214ENST00000554604 SYNE4Q8N205 404 aa15.92■□□□□ 0.14
SHMT2-214ENST00000554604 TSPYL6Q8N831 410 aa15.92■□□□□ 0.14
SHMT2-214ENST00000554604 STK31Q9BXU1 1019 aa15.92■□□□□ 0.14
SHMT2-214ENST00000554604 ZNF277Q9NRM2 450 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-214ENST00000554604 TAF1P21675 1872 aa15.92■□□□□ 0.14
SHMT2-214ENST00000554604 DDX60Q8IY21 1712 aaKnown RBP15.91■□□□□ 0.14
SHMT2-214ENST00000554604 TWISTNBQ3B726 338 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-214ENST00000554604 GRIPAP1Q4V328 841 aa15.91■□□□□ 0.14
SHMT2-214ENST00000554604 RBM46Q8TBY0 533 aaKnown RBP15.91■□□□□ 0.14
SHMT2-214ENST00000554604 ISCA1Q9BUE6 129 aa15.91■□□□□ 0.14
SHMT2-214ENST00000554604 DDX46Q7L014 1031 aaKnown RBP15.9■□□□□ 0.14
SHMT2-214ENST00000554604 WDR63Q8IWG1 891 aa15.9■□□□□ 0.14
SHMT2-214ENST00000554604 FAM89AQ96GI7 184 aa15.9■□□□□ 0.14
SHMT2-214ENST00000554604 WDR90Q96KV7 1748 aa15.9■□□□□ 0.14
SHMT2-214ENST00000554604 IARSP41252 1262 aaKnown RBP15.89■□□□□ 0.13
SHMT2-214ENST00000554604 TRIM28Q13263 835 aaKnown RBP15.89■□□□□ 0.13
SHMT2-214ENST00000554604 RTL5Q5HYW3 569 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-214ENST00000554604 PSMD1Q99460 953 aa15.89■□□□□ 0.13
SHMT2-214ENST00000554604 ABCC4O15439 1325 aa15.89■□□□□ 0.13
SHMT2-214ENST00000554604 BBOX1O75936 387 aa15.88■□□□□ 0.13
SHMT2-214ENST00000554604 JDP2Q8WYK2 163 aa15.88■□□□□ 0.13
SHMT2-214ENST00000554604 MYD88Q99836 296 aa15.88■□□□□ 0.13
SHMT2-214ENST00000554604 FANCIQ9NVI1 1328 aa15.88■□□□□ 0.13
SHMT2-214ENST00000554604 DDNO94850 711 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-214ENST00000554604 HSP90B1P14625 803 aaKnown RBP15.87■□□□□ 0.13
SHMT2-214ENST00000554604 FSTL1Q12841 308 aa15.87■□□□□ 0.13
SHMT2-214ENST00000554604 ATP6V0A2Q9Y487 856 aa15.87■□□□□ 0.13
SHMT2-214ENST00000554604 SCN4AP35499 1836 aa15.87■□□□□ 0.13
SHMT2-214ENST00000554604 IRS4O14654 1257 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-214ENST00000554604 SLC4A2P04920 1241 aa15.86■□□□□ 0.13
SHMT2-214ENST00000554604 CCDC191Q8NCU4 936 aa15.86■□□□□ 0.13
SHMT2-214ENST00000554604 SMC1BQ8NDV3 1235 aa15.86■□□□□ 0.13
SHMT2-214ENST00000554604 METTL22Q9BUU2 404 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-214ENST00000554604 MAP3K2Q9Y2U5 619 aa15.86■□□□□ 0.13
SHMT2-214ENST00000554604 SNED1Q8TER0 1413 aa15.85■□□□□ 0.13
SHMT2-214ENST00000554604 APLP1P51693 650 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 1163.7 ms