RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 ANKRD13DQ6ZTN6 518 aa16.85■□□□□ 0.29
SHMT2-211ENST00000554310 UTP14AQ9BVJ6 771 aaKnown RBP16.85■□□□□ 0.29
SHMT2-211ENST00000554310 GOLGA2Q08379 1002 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 NLRP10Q86W26 655 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 TSPYL6Q8N831 410 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 GPBP1L1Q9HC44 474 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-211ENST00000554310 RNF181Q9P0P0 153 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 ZC3H4Q9UPT8 1303 aaKnown RBP16.84■□□□□ 0.29
SHMT2-211ENST00000554310 LAMB2P55268 1798 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 CACNA1FO60840 1977 aa16.84■□□□□ 0.29
SHMT2-211ENST00000554310 NFKBIEO00221 500 aa16.83■□□□□ 0.28
SHMT2-211ENST00000554310 C21orf2O43822 256 aa16.83■□□□□ 0.28
SHMT2-211ENST00000554310 RASSF7Q02833 373 aa16.83■□□□□ 0.28
SHMT2-211ENST00000554310 TWISTNBQ3B726 338 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-211ENST00000554310 CCDC88AQ3V6T2 1871 aa16.83■□□□□ 0.28
SHMT2-211ENST00000554310 LTBP3Q9NS15 1303 aa16.83■□□□□ 0.28
SHMT2-211ENST00000554310 DICER1Q9UPY3 1922 aaKnown RBP16.83■□□□□ 0.28
SHMT2-211ENST00000554310 SALL2Q9Y467 1007 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-211ENST00000554310 CCER2I3L3R5 266 aa16.82■□□□□ 0.28
SHMT2-211ENST00000554310 LMNB1P20700 586 aa16.82■□□□□ 0.28
SHMT2-211ENST00000554310 ALDH1B1P30837 517 aa16.82■□□□□ 0.28
SHMT2-211ENST00000554310 STK31Q9BXU1 1019 aa16.82■□□□□ 0.28
SHMT2-211ENST00000554310 DDX60Q8IY21 1712 aaKnown RBP16.82■□□□□ 0.28
SHMT2-211ENST00000554310 SH3TC1Q8TE82 1336 aa16.81■□□□□ 0.28
SHMT2-211ENST00000554310 HOXA10P31260 410 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-211ENST00000554310 SLC10A5Q5PT55 438 aa16.81■□□□□ 0.28
SHMT2-211ENST00000554310 RPGRQ92834 1020 aaKnown RBP16.81■□□□□ 0.28
SHMT2-211ENST00000554310 ISCA1Q9BUE6 129 aa16.81■□□□□ 0.28
SHMT2-211ENST00000554310 TAOK3Q9H2K8 898 aa16.81■□□□□ 0.28
SHMT2-211ENST00000554310 MYH16Q9H6N6 1097 aa16.81■□□□□ 0.28
SHMT2-211ENST00000554310 PHAXQ9H814 394 aaKnown RBP16.81■□□□□ 0.28
SHMT2-211ENST00000554310 ZNF219Q9P2Y4 722 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-211ENST00000554310 DDX58O95786 925 aaKnown RBP16.8■□□□□ 0.28
SHMT2-211ENST00000554310 CCDC93Q567U6 631 aa16.8■□□□□ 0.28
SHMT2-211ENST00000554310 RIC3Q7Z5B4 369 aa16.8■□□□□ 0.28
SHMT2-211ENST00000554310 ZNF526Q8TF50 670 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-211ENST00000554310 C7orf43Q8WVR3 580 aa16.8■□□□□ 0.28
SHMT2-211ENST00000554310 NLRP3Q96P20 1036 aa16.8■□□□□ 0.28
SHMT2-211ENST00000554310 TRMT112Q9UI30 125 aaKnown RBP16.8■□□□□ 0.28
SHMT2-211ENST00000554310 ZNF521Q96K83 1311 aa16.79■□□□□ 0.28
SHMT2-211ENST00000554310 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
SHMT2-211ENST00000554310 PRELPP51888 382 aa16.78■□□□□ 0.28
SHMT2-211ENST00000554310 RBM17Q96I25 401 aaKnown RBP16.78■□□□□ 0.28
SHMT2-211ENST00000554310 CRAMP1Q96RY5 1269 aa16.78■□□□□ 0.28
SHMT2-211ENST00000554310 SNED1Q8TER0 1413 aa16.78■□□□□ 0.28
SHMT2-211ENST00000554310 KDM2BQ8NHM5 1336 aa16.77■□□□□ 0.28
SHMT2-211ENST00000554310 ATP5J2-PTCD1G3V325 749 aa16.77■□□□□ 0.28
SHMT2-211ENST00000554310 C3orf67Q6ZVT6 689 aa16.77■□□□□ 0.28
SHMT2-211ENST00000554310 EXOSC9Q06265 439 aaKnown RBP16.76■□□□□ 0.27
SHMT2-211ENST00000554310 CC2D2BQ6DHV5 1058 aa16.76■□□□□ 0.27
SHMT2-211ENST00000554310 RTKN2Q8IZC4 609 aa16.76■□□□□ 0.27
SHMT2-211ENST00000554310 SPINK5Q9NQ38 1064 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-211ENST00000554310 HCLS1P14317 486 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-211ENST00000554310 FKBP4Q02790 459 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHMT2-211ENST00000554310 KSR2Q6VAB6 950 aa16.75■□□□□ 0.27
SHMT2-211ENST00000554310 CCDC191Q8NCU4 936 aa16.75■□□□□ 0.27
SHMT2-211ENST00000554310 METTL22Q9BUU2 404 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-211ENST00000554310 LRRC37AA6NMS7 1700 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 TCERG1O14776 1098 aaKnown RBP16.74■□□□□ 0.27
SHMT2-211ENST00000554310 PPEF1O14829 653 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-211ENST00000554310 VAMP4O75379 141 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 SLC4A2P04920 1241 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 C1QTNF8P60827 252 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 GRIPAP1Q4V328 841 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 FAM89AQ96GI7 184 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 MYD88Q99836 296 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 MAP3K2Q9Y2U5 619 aa16.74■□□□□ 0.27
SHMT2-211ENST00000554310 ABCC4O15439 1325 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 PI4KAP2A4QPH2 592 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 KIF3CO14782 793 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 HSP90B1P14625 803 aaKnown RBP16.73■□□□□ 0.27
SHMT2-211ENST00000554310 FLIIQ13045 1269 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 SYNE4Q8N205 404 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 PI4KAP1Q8N8J0 262 aa16.73■□□□□ 0.27
SHMT2-211ENST00000554310 ZBTB38Q8NAP3 1195 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-211ENST00000554310 CWC25Q9NXE8 425 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-211ENST00000554310 NEXNQ0ZGT2 675 aa16.72■□□□□ 0.27
SHMT2-211ENST00000554310 OLFM4Q6UX06 510 aa16.72■□□□□ 0.27
SHMT2-211ENST00000554310 DDX46Q7L014 1031 aaKnown RBP16.72■□□□□ 0.27
SHMT2-211ENST00000554310 PSMD1Q99460 953 aa16.72■□□□□ 0.27
SHMT2-211ENST00000554310 NMRK2Q9NPI5 230 aa16.72■□□□□ 0.27
SHMT2-211ENST00000554310 WDR90Q96KV7 1748 aa16.71■□□□□ 0.27
SHMT2-211ENST00000554310 E9PSI1 815 aa16.71■□□□□ 0.27
SHMT2-211ENST00000554310 IRS4O14654 1257 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-211ENST00000554310 PCCAP05165 728 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-211ENST00000554310 GRAPQ13588 217 aa16.71■□□□□ 0.27
SHMT2-211ENST00000554310 G2E3Q7L622 706 aa16.71■□□□□ 0.27
SHMT2-211ENST00000554310 GRAPLQ8TC17 118 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-211ENST00000554310 YTHDC1Q96MU7 727 aaKnown RBP16.71■□□□□ 0.27
SHMT2-211ENST00000554310 TMX4Q9H1E5 349 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-211ENST00000554310 MYH3P11055 1940 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 GLTPD2A6NH11 291 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 FKBP5Q13451 457 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-211ENST00000554310 SF3B3Q15393 1217 aaKnown RBP16.7■□□□□ 0.26
SHMT2-211ENST00000554310 TMC4Q7Z404 712 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 ZNF428Q96B54 188 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 ZNF277Q9NRM2 450 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-211ENST00000554310 ATP6V0A2Q9Y487 856 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 CDHR2Q9BYE9 1310 aa16.7■□□□□ 0.26
SHMT2-211ENST00000554310 TAF1P21675 1872 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms