RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TMEM2Q9UHN6 1383 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 PIK3C2AO00443 1686 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 SRGAP3O43295 1099 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 ANXA1P04083 346 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 UBE2HP62256 183 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 DNM1Q05193 864 aaKnown RBP6.51□□□□□ -1.37
LIMA1-212ENST00000552491 NUTM2GQ5VZR2 741 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 CCDC83Q8IWF9 413 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 KCNF1Q9H3M0 494 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 HYPKQ9NX55 129 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 LIMCH1Q9UPQ0 1083 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 MTMR6Q9Y217 621 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 CRYBG1Q9Y4K1 1723 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 UBR1Q8IWV7 1749 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 KDM4AO75164 1064 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 CASTP20810 708 aaKnown RBP6.51□□□□□ -1.37
LIMA1-212ENST00000552491 TAF7Q15545 349 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-212ENST00000552491 DNTTIP2Q5QJE6 756 aaKnown RBP6.51□□□□□ -1.37
LIMA1-212ENST00000552491 HDGFL1Q5TGJ6 251 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 USHBP1Q8N6Y0 703 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 LTV1Q96GA3 475 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-212ENST00000552491 PYCARDQ9ULZ3 195 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 PXDNLA1KZ92 1463 aa6.51□□□□□ -1.37
LIMA1-212ENST00000552491 KCNQ3O43525 872 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 HTATSF1O43719 755 aaKnown RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 RAB11FIP3O75154 756 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 EIF2S2P20042 333 aaKnown RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 GJB2P29033 226 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 HDGFP51858 240 aaKnown RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 PRDM10Q9NQV6 1147 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 SPTLC3Q9NUV7 552 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 SMC3Q9UQE7 1217 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 TTC21AQ8NDW8 1320 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 MAP3K5Q99683 1374 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 LETM1O95202 739 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 HOXC9P31274 260 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 ME3Q16798 604 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 BEND3Q5T5X7 828 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 FAM173BQ6P4H8 233 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 NECAB1Q8N987 351 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 KIF1BPQ96EK5 621 aa6.5□□□□□ -1.37
LIMA1-212ENST00000552491 MARF1Q9Y4F3 1742 aaKnown RBP6.5□□□□□ -1.37
LIMA1-212ENST00000552491 TNRQ92752 1358 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 SETD1BQ9UPS6 1966 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 PI4KAP2A4QPH2 592 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 PLCB2Q00722 1185 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 PRPF40BQ6NWY9 871 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 CNTROBQ8N137 903 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 KLHL34Q8N239 644 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 PI4KAP1Q8N8J0 262 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 NGDNQ8NEJ9 315 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 JAKMIP1Q96N16 626 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 LGR6Q9HBX8 967 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 CHPF2Q9P2E5 772 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 ERBB3P21860 1342 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 GTF2F1P35269 517 aaKnown RBP eCLIP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 NLRP6P59044 892 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 TTC6Q86TZ1 520 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 KIAA1524Q8TCG1 905 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 PA2G4Q9UQ80 394 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 TAF6LQ9Y6J9 622 aa6.49□□□□□ -1.37
LIMA1-212ENST00000552491 USP42Q9H9J4 1324 aaKnown RBP6.49□□□□□ -1.37
LIMA1-212ENST00000552491 HMGN5P82970 282 aaKnown RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 SPC24Q8NBT2 197 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 PRIMPOLQ96LW4 560 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 ZSWIM6Q9HCJ5 1215 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 PDRG1Q9NUG6 133 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 ADCY9O60503 1353 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 VPS37CA5D8V6 355 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 HOXB1P14653 301 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 LIG1P18858 919 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 EIF4A1P60842 406 aaKnown RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 NECTIN1Q15223 517 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 VPS53Q5VIR6 699 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 CDC37L1Q7L3B6 337 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 ZNF467Q7Z7K2 595 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 FERMT3Q86UX7 667 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 DNAAF4Q8WXU2 420 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 KCNB2Q92953 911 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 FAM227BQ96M60 508 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 TCEANC2Q96MN5 208 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 CCDC94Q9BW85 323 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-212ENST00000552491 BCL2L12Q9HB09 334 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 TPCN1Q9ULQ1 816 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 AMOTL2Q9Y2J4 779 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 CHMP3Q9Y3E7 222 aa6.48□□□□□ -1.37
LIMA1-212ENST00000552491 GLRX3O76003 335 aaKnown RBP6.47□□□□□ -1.37
LIMA1-212ENST00000552491 CAMK4Q16566 473 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 DIAPH3Q9NSV4 1193 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 ATP6V1DQ9Y5K8 247 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 CEMIPQ8WUJ3 1361 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 PLEKHG1Q9ULL1 1385 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 PSEN1P49768 467 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 ATP2B3Q16720 1220 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 SMAP1Q8IYB5 467 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-212ENST00000552491 ESF1Q9H501 851 aaKnown RBP6.47□□□□□ -1.37
LIMA1-212ENST00000552491 BABAM1Q9NWV8 329 aa6.47□□□□□ -1.37
LIMA1-212ENST00000552491 TTC41PQ6P2S7 1318 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms