RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 NOL8Q76FK4 1167 aaKnown RBP8.93□□□□□ -0.98
VPS29-210ENST00000552130 SYT9Q86SS6 491 aa8.93□□□□□ -0.98
VPS29-210ENST00000552130 ZDHHC1Q8WTX9 485 aa8.93□□□□□ -0.98
VPS29-210ENST00000552130 HIRIP3Q9BW71 556 aaPredicted RBP8.93□□□□□ -0.98
VPS29-210ENST00000552130 TPSG1Q9NRR2 321 aa8.93□□□□□ -0.98
VPS29-210ENST00000552130 CABP1Q9NZU7 370 aa8.93□□□□□ -0.98
VPS29-210ENST00000552130 EML1O00423 815 aa8.92□□□□□ -0.98
VPS29-210ENST00000552130 DNAJC14Q6Y2X3 702 aaPredicted RBP8.92□□□□□ -0.98
VPS29-210ENST00000552130 TNFRSF25Q93038 417 aa8.92□□□□□ -0.98
VPS29-210ENST00000552130 SCHIP1Q9P0W5 487 aaPredicted RBP8.92□□□□□ -0.98
VPS29-210ENST00000552130 PPP1R1BQ9UD71 204 aaPredicted RBP8.92□□□□□ -0.98
VPS29-210ENST00000552130 STARD13Q9Y3M8 1113 aa8.92□□□□□ -0.98
VPS29-210ENST00000552130 ZC3H6P61129 1189 aaKnown RBP8.91□□□□□ -0.98
VPS29-210ENST00000552130 TMEM88BA6NKF7 163 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 SPDYE3A6NKU9 549 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 DYRK3O43781 588 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 ALAS2P22557 587 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 SOX11P35716 441 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 EPHA4P54764 986 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 TEAD4Q15561 434 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 WASHC4Q2M389 1173 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 BCL2L13Q9BXK5 485 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 GPC6Q9Y625 555 aaPredicted RBP8.9□□□□□ -0.98
VPS29-210ENST00000552130 PARP3Q9Y6F1 533 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 GJA3Q9Y6H8 435 aa8.9□□□□□ -0.98
VPS29-210ENST00000552130 SF3A1Q15459 793 aaKnown RBP8.89□□□□□ -0.99
VPS29-210ENST00000552130 PRRT3Q5FWE3 981 aa8.89□□□□□ -0.99
VPS29-210ENST00000552130 B4GALNT3Q6L9W6 998 aa8.89□□□□□ -0.99
VPS29-210ENST00000552130 ZNF526Q8TF50 670 aaPredicted RBP8.89□□□□□ -0.99
VPS29-210ENST00000552130 BACH1O14867 736 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 NID1P14543 1247 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 HDGFL1Q5TGJ6 251 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 BICDL1Q6ZP65 573 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 L3MBTL2Q969R5 705 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 SLC30A3Q99726 388 aa8.88□□□□□ -0.99
VPS29-210ENST00000552130 M0R082 166 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 PIK3CDO00329 1044 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 MARCH6O60337 910 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 NOS2P35228 1153 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 MICALL1Q8N3F8 863 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 ZNF417Q8TAU3 575 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 ZNF587Q96SQ5 575 aaPredicted RBP8.87□□□□□ -0.99
VPS29-210ENST00000552130 ZNF358Q9NW07 568 aa8.87□□□□□ -0.99
VPS29-210ENST00000552130 APBA3O96018 575 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 ALBP02768 609 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 SFSWAPQ12872 951 aaKnown RBP8.86□□□□□ -0.99
VPS29-210ENST00000552130 SEMA3FQ13275 785 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 TMED8Q6PL24 325 aaPredicted RBP8.86□□□□□ -0.99
VPS29-210ENST00000552130 LRRC69Q6ZNQ3 347 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 C20orf204Q6ZNR8 217 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 GIPC2Q8TF65 315 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 PPP1R12CQ9BZL4 782 aa8.86□□□□□ -0.99
VPS29-210ENST00000552130 FAM229AH3BQW9 127 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 LZTS3O60299 673 aaPredicted RBP8.85□□□□□ -0.99
VPS29-210ENST00000552130 NAALADL2Q58DX5 795 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 ARTNQ5T4W7 220 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 POTEAQ6S8J7 498 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 C8orf86Q6ZUL3 223 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS29-210ENST00000552130 CCER1Q8TC90 406 aaPredicted RBP8.85□□□□□ -0.99
VPS29-210ENST00000552130 ADAMTS19Q8TE59 1207 aa8.85□□□□□ -0.99
VPS29-210ENST00000552130 PLEKHD1A6NEE1 506 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 ATG7O95352 703 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 EML3Q32P44 896 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 GIMAP6Q6P9H5 292 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 NACC1Q96RE7 527 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 KRTAP4-12Q9BQ66 201 aa8.84□□□□□ -0.99
VPS29-210ENST00000552130 KCNQ4P56696 695 aa8.83□□□□□ -1
VPS29-210ENST00000552130 GTF2IP78347 998 aa8.83□□□□□ -1
VPS29-210ENST00000552130 PRDM16Q9HAZ2 1276 aa8.83□□□□□ -1
VPS29-210ENST00000552130 NOD1Q9Y239 953 aa8.83□□□□□ -1
VPS29-210ENST00000552130 VAMP1P23763 118 aa8.82□□□□□ -1
VPS29-210ENST00000552130 TRIM28Q13263 835 aaKnown RBP8.82□□□□□ -1
VPS29-210ENST00000552130 PRSS36Q5K4E3 855 aa8.82□□□□□ -1
VPS29-210ENST00000552130 SH3PXD2AQ5TCZ1 1133 aa8.82□□□□□ -1
VPS29-210ENST00000552130 SLC9A9Q8IVB4 645 aa8.82□□□□□ -1
VPS29-210ENST00000552130 NFATC2IPQ8NCF5 419 aa8.82□□□□□ -1
VPS29-210ENST00000552130 ZFP64Q9NPA5 681 aa8.82□□□□□ -1
VPS29-210ENST00000552130 RIPOR2Q9Y4F9 1068 aa8.82□□□□□ -1
VPS29-210ENST00000552130 LOC102724159A0A0B4J2E5 919 aa8.81□□□□□ -1
VPS29-210ENST00000552130 H2AFB1P0C5Y9 115 aa8.81□□□□□ -1
VPS29-210ENST00000552130 H2AFB2P0C5Z0 115 aa8.81□□□□□ -1
VPS29-210ENST00000552130 ADH7P40394 386 aa8.81□□□□□ -1
VPS29-210ENST00000552130 SPEM2Q0P670 501 aa8.81□□□□□ -1
VPS29-210ENST00000552130 ADGRE1Q14246 886 aa8.81□□□□□ -1
VPS29-210ENST00000552130 PWP2Q15269 919 aaKnown RBP8.81□□□□□ -1
VPS29-210ENST00000552130 GRIK4Q16099 956 aa8.81□□□□□ -1
VPS29-210ENST00000552130 NOM1Q5C9Z4 860 aaKnown RBP8.81□□□□□ -1
VPS29-210ENST00000552130 LCE3BQ5TA77 95 aa8.81□□□□□ -1
VPS29-210ENST00000552130 ILDR2Q71H61 639 aa8.81□□□□□ -1
VPS29-210ENST00000552130 ALG2Q9H553 416 aa8.81□□□□□ -1
VPS29-210ENST00000552130 SCO2A0A1W2PP80 73 aa8.8□□□□□ -1
VPS29-210ENST00000552130 PALM3A6NDB9 673 aaPredicted RBP8.8□□□□□ -1
VPS29-210ENST00000552130 LMOD1P29536 600 aaPredicted RBP8.8□□□□□ -1
VPS29-210ENST00000552130 HIRAP54198 1017 aaPredicted RBP8.8□□□□□ -1
VPS29-210ENST00000552130 C1orf53Q5VUE5 145 aa8.8□□□□□ -1
VPS29-210ENST00000552130 NCOA4Q13772 614 aa8.79□□□□□ -1
VPS29-210ENST00000552130 ZNF662Q6ZS27 426 aa8.79□□□□□ -1
VPS29-210ENST00000552130 TNS4Q8IZW8 715 aa8.79□□□□□ -1
VPS29-210ENST00000552130 MICAL1Q8TDZ2 1067 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms