RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 MRS2Q9HD23 443 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 ITGB4P16144 1822 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 BRCA1P38398 1863 aaKnown RBP9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 POTECB2RU33 542 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 ZPR1O75312 459 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 CABP4P57796 275 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 MLLT1Q03111 559 aaPredicted RBP9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 ERFEQ4G0M1 354 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 C2CD5Q86YS7 1000 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 TTLL6Q8N841 843 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 MYBBP1AQ9BQG0 1328 aaKnown RBP9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 CARMIL3Q8ND23 1372 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 ARFGEF1Q9Y6D6 1849 aa9.45□□□□□ -0.9
DEPDC4-208ENST00000549341 HSPA8P11142 646 aaKnown RBP9.44□□□□□ -0.9
DEPDC4-208ENST00000549341 ZNF530Q6P9A1 599 aaPredicted RBP9.44□□□□□ -0.9
DEPDC4-208ENST00000549341 NPC1L1Q9UHC9 1359 aa9.44□□□□□ -0.9
DEPDC4-208ENST00000549341 TIAM2Q8IVF5 1701 aa9.44□□□□□ -0.9
DEPDC4-208ENST00000549341 ERVV-2B6SEH9 535 aa9.43□□□□□ -0.9
DEPDC4-208ENST00000549341 NFIXQ14938 502 aa9.43□□□□□ -0.9
DEPDC4-208ENST00000549341 EAPPQ56P03 285 aaPredicted RBP9.43□□□□□ -0.9
DEPDC4-208ENST00000549341 TMEM88BA6NKF7 163 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 GOLGA8CPA6NN73 597 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 RGL2O15211 777 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 PER1O15534 1290 aaPredicted RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 C21orf2O43822 256 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 DDNO94850 711 aaPredicted RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 HSP90AB1P08238 724 aaKnown RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 TNNT2P45379 298 aaPredicted RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 GRM1Q13255 1194 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 CNGB1Q14028 1251 aaPredicted RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 DSG2Q14126 1118 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 BICDL1Q6ZP65 573 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 PAXIP1Q6ZW49 1069 aaPredicted RBP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 ZNF622Q969S3 477 aaKnown RBP eCLIP9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 WBP1LQ9NX94 342 aa9.42□□□□□ -0.9
DEPDC4-208ENST00000549341 PASKQ96RG2 1323 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 H0YIN7 160 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 TM4SF1P30408 202 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 EIF4A2Q14240 407 aaKnown RBP9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 INTS5Q6P9B9 1019 aaKnown RBP9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 THSD4Q6ZMP0 1018 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 LDHDQ86WU2 507 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 TAOK3Q9H2K8 898 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 BCL2L12Q9HB09 334 aa9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 ABT1Q9ULW3 272 aaKnown RBP9.41□□□□□ -0.9
DEPDC4-208ENST00000549341 COL15A1P39059 1388 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 COL5A3P25940 1745 aaPredicted RBP9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 SOS1Q07889 1333 aaPredicted RBP9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 IQCA1LA6NCM1 817 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 SERPINB2P05120 415 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 MTHFSP49914 203 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 C1orf141Q5JVX7 400 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 CC2D1BQ5T0F9 858 aaKnown RBP9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 DNAJC10Q8IXB1 793 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 CCDC24Q8N4L8 307 aa9.4□□□□□ -0.9
DEPDC4-208ENST00000549341 PLEKHO1Q53GL0 409 aaPredicted RBP9.39□□□□□ -0.91
DEPDC4-208ENST00000549341 ZNF454Q8N9F8 522 aa9.39□□□□□ -0.91
DEPDC4-208ENST00000549341 NFATC2IPQ8NCF5 419 aa9.39□□□□□ -0.91
DEPDC4-208ENST00000549341 TSKSQ9UJT2 592 aa9.39□□□□□ -0.91
DEPDC4-208ENST00000549341 BHMG1C9JSJ3 638 aaPredicted RBP9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 NPHP1O15259 732 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 PTPREP23469 700 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 MAP2K1Q02750 393 aaPredicted RBP9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 AMER1Q5JTC6 1135 aaPredicted RBP9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 FAM9BQ8IZU0 186 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 MRPL50Q8N5N7 158 aaKnown RBP9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 OXER1Q8TDS5 423 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 WNT2BQ93097 391 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 BEGAINQ9BUH8 593 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 CARD14Q9BXL6 1004 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 TAF1DQ9H5J8 278 aaPredicted RBP9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 NARFQ9UHQ1 456 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 ZBTB1Q9Y2K1 713 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 KIF20BQ96Q89 1820 aa9.38□□□□□ -0.91
DEPDC4-208ENST00000549341 WDR33Q9C0J8 1336 aaKnown RBP9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 ZNF541Q9H0D2 1346 aa9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 DEFB115Q30KQ5 88 aa9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 MAP1SQ66K74 1059 aaPredicted RBP9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 AEBP1Q8IUX7 1158 aa9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 POLKQ9UBT6 870 aa9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 ZNF330Q9Y3S2 320 aaPredicted RBP9.37□□□□□ -0.91
DEPDC4-208ENST00000549341 ZNF831Q5JPB2 1677 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 RASSF10A6NK89 507 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 CANXP27824 592 aaKnown RBP9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 HNRNPUQ00839 825 aaKnown RBP eCLIP9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 PRPF40BQ6NWY9 871 aaKnown RBP9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 MORC1Q86VD1 984 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 NBPF3Q9H094 633 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 TJP1Q07157 1748 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 SBF1O95248 1867 aa9.36□□□□□ -0.91
DEPDC4-208ENST00000549341 RNF123Q5XPI4 1314 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 LTBP3Q9NS15 1303 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 ITGBL1O95965 494 aaPredicted RBP9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 CYP19A1P11511 503 aaPredicted RBP9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 EPHX2P34913 555 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 PDE6BP35913 854 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 SLC39A6Q13433 755 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 WDR43Q15061 677 aaKnown RBP eCLIP9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 AMOTQ4VCS5 1084 aa9.35□□□□□ -0.91
DEPDC4-208ENST00000549341 HACL1Q9UJ83 578 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms