RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ERVV-1B6SEH8 477 aa22.5■■□□□ 1.19
VPS29-204ENST00000548259 HSPA8P11142 646 aaKnown RBP22.5■■□□□ 1.19
VPS29-204ENST00000548259 CRY2Q49AN0 593 aa22.5■■□□□ 1.19
VPS29-204ENST00000548259 KIF6Q6ZMV9 814 aa22.5■■□□□ 1.19
VPS29-204ENST00000548259 LARGE2Q8N3Y3 721 aa22.5■■□□□ 1.19
VPS29-204ENST00000548259 HLFQ16534 295 aa22.49■■□□□ 1.19
VPS29-204ENST00000548259 ABHD8Q96I13 439 aa22.49■■□□□ 1.19
VPS29-204ENST00000548259 USP50Q70EL3 339 aaPredicted RBP22.48■■□□□ 1.19
VPS29-204ENST00000548259 PNISRQ8TF01 805 aaKnown RBP22.48■■□□□ 1.19
VPS29-204ENST00000548259 RBM17Q96I25 401 aaKnown RBP22.47■■□□□ 1.19
VPS29-204ENST00000548259 HOXA10P31260 410 aaPredicted RBP22.46■■□□□ 1.19
VPS29-204ENST00000548259 NUTM1Q86Y26 1132 aa22.46■■□□□ 1.19
VPS29-204ENST00000548259 NIM1KQ8IY84 436 aa22.46■■□□□ 1.19
VPS29-204ENST00000548259 NGEFQ8N5V2 710 aa22.46■■□□□ 1.19
VPS29-204ENST00000548259 CAPNS2Q96L46 248 aa22.46■■□□□ 1.19
VPS29-204ENST00000548259 DCTN1Q14203 1278 aa22.45■■□□□ 1.18
VPS29-204ENST00000548259 GPR101Q96P66 508 aaPredicted RBP22.45■■□□□ 1.18
VPS29-204ENST00000548259 GRM1Q13255 1194 aa22.44■■□□□ 1.18
VPS29-204ENST00000548259 MAP3K15Q6ZN16 1313 aa22.44■■□□□ 1.18
VPS29-204ENST00000548259 ADAMTSL1Q8N6G6 1762 aa22.44■■□□□ 1.18
VPS29-204ENST00000548259 CRAMP1Q96RY5 1269 aa22.44■■□□□ 1.18
VPS29-204ENST00000548259 IBTKQ9P2D0 1353 aaPredicted RBP22.43■■□□□ 1.18
VPS29-204ENST00000548259 PPEF1O14829 653 aaPredicted RBP22.43■■□□□ 1.18
VPS29-204ENST00000548259 VPS33BQ9H267 617 aa22.43■■□□□ 1.18
VPS29-204ENST00000548259 ABCC12Q96J65 1359 aa22.42■■□□□ 1.18
VPS29-204ENST00000548259 EPS15P42566 896 aa22.42■■□□□ 1.18
VPS29-204ENST00000548259 SCNN1DP51172 638 aa22.42■■□□□ 1.18
VPS29-204ENST00000548259 RRP7AQ9Y3A4 280 aaKnown RBP22.42■■□□□ 1.18
VPS29-204ENST00000548259 RIC1Q4ADV7 1423 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 PPIP5K2O43314 1243 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 CA12O43570 354 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 GPTP24298 496 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 MAP2K2P36507 400 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 FAM161AQ3B820 660 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 PPP1R42Q7Z4L9 355 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 SUPT20HQ8NEM7 779 aa22.41■■□□□ 1.18
VPS29-204ENST00000548259 ADARB2Q9NS39 739 aaKnown RBP22.41■■□□□ 1.18
VPS29-204ENST00000548259 CYP4F22Q6NT55 531 aa22.4■■□□□ 1.18
VPS29-204ENST00000548259 MIS18AQ9NYP9 233 aa22.4■■□□□ 1.18
VPS29-204ENST00000548259 TLL2Q9Y6L7 1015 aa22.4■■□□□ 1.18
VPS29-204ENST00000548259 SNED1Q8TER0 1413 aa22.4■■□□□ 1.18
VPS29-204ENST00000548259 CCDC85CA6NKD9 419 aa22.39■■□□□ 1.17
VPS29-204ENST00000548259 NLRP3Q96P20 1036 aa22.39■■□□□ 1.17
VPS29-204ENST00000548259 TCERG1O14776 1098 aaKnown RBP22.38■■□□□ 1.17
VPS29-204ENST00000548259 MYL6BP14649 208 aa22.38■■□□□ 1.17
VPS29-204ENST00000548259 PPP2R1AP30153 589 aa22.38■■□□□ 1.17
VPS29-204ENST00000548259 MLLT1Q03111 559 aaPredicted RBP22.38■■□□□ 1.17
VPS29-204ENST00000548259 PARP10Q53GL7 1025 aa22.38■■□□□ 1.17
VPS29-204ENST00000548259 ZBTB3Q9H5J0 574 aa22.38■■□□□ 1.17
VPS29-204ENST00000548259 SUSD4Q5VX71 490 aa22.37■■□□□ 1.17
VPS29-204ENST00000548259 GPRC5DQ9NZD1 345 aa22.37■■□□□ 1.17
VPS29-204ENST00000548259 TRAF5O00463 557 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 SLC34A2O95436 690 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 CST9Q5W186 159 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 TTLL7Q6ZT98 887 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 ZNRF3Q9ULT6 936 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 ATP6V0A2Q9Y487 856 aa22.36■■□□□ 1.17
VPS29-204ENST00000548259 ERBB4Q15303 1308 aa22.35■■□□□ 1.17
VPS29-204ENST00000548259 AOC3Q16853 763 aa22.35■■□□□ 1.17
VPS29-204ENST00000548259 GIGYF2Q6Y7W6 1299 aaKnown RBP22.35■■□□□ 1.17
VPS29-204ENST00000548259 UBN2Q6ZU65 1347 aa22.34■■□□□ 1.17
VPS29-204ENST00000548259 CDHR2Q9BYE9 1310 aa22.34■■□□□ 1.17
VPS29-204ENST00000548259 CELF2O95319 508 aaKnown RBP22.34■■□□□ 1.17
VPS29-204ENST00000548259 NTSR2O95665 410 aa22.34■■□□□ 1.17
VPS29-204ENST00000548259 EIF4A1P60842 406 aaKnown RBP22.34■■□□□ 1.17
VPS29-204ENST00000548259 FMR1Q06787 632 aaKnown RBP eCLIP22.34■■□□□ 1.17
VPS29-204ENST00000548259 ZNF34Q8IZ26 560 aa22.34■■□□□ 1.17
VPS29-204ENST00000548259 HHIPL1Q96JK4 782 aa22.34■■□□□ 1.17
VPS29-204ENST00000548259 PNNQ9H307 717 aaKnown RBP22.34■■□□□ 1.17
VPS29-204ENST00000548259 TNIP1Q15025 636 aa22.33■■□□□ 1.17
VPS29-204ENST00000548259 SAPCD2Q86UD0 394 aa22.33■■□□□ 1.17
VPS29-204ENST00000548259 ZC3H15Q8WU90 426 aaKnown RBP22.33■■□□□ 1.17
VPS29-204ENST00000548259 UTP14AQ9BVJ6 771 aaKnown RBP22.33■■□□□ 1.17
VPS29-204ENST00000548259 BCL2L13Q9BXK5 485 aa22.33■■□□□ 1.17
VPS29-204ENST00000548259 BBOX1O75936 387 aa22.32■■□□□ 1.16
VPS29-204ENST00000548259 DPP8Q6V1X1 898 aaPredicted RBP22.32■■□□□ 1.16
VPS29-204ENST00000548259 COL4A5P29400 1685 aa22.31■■□□□ 1.16
VPS29-204ENST00000548259 BRPF1P55201 1214 aaPredicted RBP22.31■■□□□ 1.16
VPS29-204ENST00000548259 CXCL9Q07325 125 aa22.31■■□□□ 1.16
VPS29-204ENST00000548259 CIAPIN1Q6FI81 312 aa22.31■■□□□ 1.16
VPS29-204ENST00000548259 CFAP44Q96MT7 982 aa22.31■■□□□ 1.16
VPS29-204ENST00000548259 LAMB4A4D0S4 1761 aa22.3■■□□□ 1.16
VPS29-204ENST00000548259 AOC2O75106 756 aa22.3■■□□□ 1.16
VPS29-204ENST00000548259 RGS19P49795 217 aa22.3■■□□□ 1.16
VPS29-204ENST00000548259 GMPSP49915 693 aaPredicted RBP22.3■■□□□ 1.16
VPS29-204ENST00000548259 RTFDC1Q9BY42 306 aaPredicted RBP22.3■■□□□ 1.16
VPS29-204ENST00000548259 THSD7BQ9C0I4 1608 aa22.3■■□□□ 1.16
VPS29-204ENST00000548259 HSP90AB3PQ58FF7 597 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 SLC10A5Q5PT55 438 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 CDC37L1Q7L3B6 337 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 MPNDQ8N594 471 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 ZNF408Q9H9D4 720 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 MAPK8IP3Q9UPT6 1336 aa22.29■■□□□ 1.16
VPS29-204ENST00000548259 LTBP1Q14766 1721 aa22.28■■□□□ 1.16
VPS29-204ENST00000548259 NFE2L2Q16236 605 aa22.28■■□□□ 1.16
VPS29-204ENST00000548259 SP8Q8IXZ3 490 aa22.28■■□□□ 1.16
VPS29-204ENST00000548259 GLIS2Q9BZE0 524 aaPredicted RBP22.28■■□□□ 1.16
VPS29-204ENST00000548259 PGAP2Q9UHJ9 254 aa22.28■■□□□ 1.16
VPS29-204ENST00000548259 TSKSQ9UJT2 592 aa22.28■■□□□ 1.16
VPS29-204ENST00000548259 H7C1D1 291 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms