RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NFE2L2Q16236 605 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 MTHFSDQ2M296 383 aaKnown RBP6.39□□□□□ -1.39
USP28-213ENST00000544967 TMEM51Q9NW97 253 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 NLRP2Q9NX02 1062 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 NUP98P52948 1817 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 AFDNP55196 1824 aaKnown RBP6.39□□□□□ -1.39
USP28-213ENST00000544967 LRRC37AA6NMS7 1700 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 TPM3P06753 285 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 SLC27A3Q5K4L6 730 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 SULT6B1Q6IMI4 303 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 FAM184AQ8NB25 1140 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 RAPGEF4Q8WZA2 1011 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 RUNDC1Q96C34 613 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 A0A1B0GUL6 1792 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 MBD3O95983 291 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 FOXD4L6Q3SYB3 417 aaPredicted RBP6.38□□□□□ -1.39
USP28-213ENST00000544967 FOXD4L3Q6VB84 417 aaPredicted RBP6.38□□□□□ -1.39
USP28-213ENST00000544967 PIBF1Q8WXW3 757 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 KIF3AQ9Y496 699 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 BAG4O95429 457 aaKnown RBP6.38□□□□□ -1.39
USP28-213ENST00000544967 MAPK8IP2Q13387 824 aaPredicted RBP6.38□□□□□ -1.39
USP28-213ENST00000544967 IRF5Q13568 498 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 BMP2KLQ5H9B9 411 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 LRSAM1Q6UWE0 723 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 ANKRD7Q92527 254 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 PHACTR3Q96KR7 559 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 TRIM35Q9UPQ4 493 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 DDX60Q8IY21 1712 aaKnown RBP6.38□□□□□ -1.39
USP28-213ENST00000544967 RIC1Q4ADV7 1423 aa6.38□□□□□ -1.39
USP28-213ENST00000544967 RNMTO43148 476 aaKnown RBP6.37□□□□□ -1.39
USP28-213ENST00000544967 RARSP54136 660 aaKnown RBP6.37□□□□□ -1.39
USP28-213ENST00000544967 MVPQ14764 893 aaKnown RBP6.37□□□□□ -1.39
USP28-213ENST00000544967 SLC52A2Q9HAB3 445 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 CNTNAP4Q9C0A0 1308 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 CCDC66A2RUB6 948 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 ZSCAN23Q3MJ62 389 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 ARFGEF1Q9Y6D6 1849 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 ANKRD31Q8N7Z5 1873 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 ATXN8OSP0DMR3 200 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 HSP90AB4PQ58FF6 505 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 DIAPH3Q9NSV4 1193 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 PCDHB15Q9Y5E8 787 aa6.37□□□□□ -1.39
USP28-213ENST00000544967 GNAT3A8MTJ3 354 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 CTIFO43310 598 aaKnown RBP6.36□□□□□ -1.39
USP28-213ENST00000544967 BCAR3O75815 825 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 PRKAR2BP31323 418 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 USHBP1Q8N6Y0 703 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 IL17REQ8NFR9 667 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 AKT1S1Q96B36 256 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 OGFRQ9NZT2 677 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 DDX49Q9Y6V7 483 aaKnown RBP6.36□□□□□ -1.39
USP28-213ENST00000544967 CSB-PGBD3P0DP91 1061 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 FKBP5Q13451 457 aaPredicted RBP6.36□□□□□ -1.39
USP28-213ENST00000544967 LMBRD1Q9NUN5 540 aa6.36□□□□□ -1.39
USP28-213ENST00000544967 HOXB7P09629 217 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 TMPOP42166 694 aaKnown RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 RC3H1Q5TC82 1133 aaKnown RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 ZNF710Q8N1W2 664 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PALLDQ8WX93 1383 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PHF14O94880 888 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PTMAP06454 111 aaKnown RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 LMOD3Q0VAK6 560 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 RABEP1Q15276 862 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PROM2Q8N271 834 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 KIF2CQ99661 725 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 ZHX1Q9UKY1 873 aaPredicted RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 DDX19BQ9UMR2 479 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PXDNLA1KZ92 1463 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 COL11A2P13942 1736 aaPredicted RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 LTBP1Q14766 1721 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PIGBQ92521 554 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 SMARCC1Q92922 1105 aaPredicted RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 SYAP1Q96A49 352 aaPredicted RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 RBSNQ9H1K0 784 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 GPBP1L1Q9HC44 474 aaPredicted RBP6.35□□□□□ -1.39
USP28-213ENST00000544967 COG6Q9Y2V7 657 aa6.35□□□□□ -1.39
USP28-213ENST00000544967 PATL2C9JE40 543 aaKnown RBP6.34□□□□□ -1.39
USP28-213ENST00000544967 CHL1O00533 1208 aa6.34□□□□□ -1.39
USP28-213ENST00000544967 NOL8Q76FK4 1167 aaKnown RBP6.34□□□□□ -1.39
USP28-213ENST00000544967 ATG3Q9NT62 314 aa6.34□□□□□ -1.39
USP28-213ENST00000544967 SOX12O15370 315 aa6.34□□□□□ -1.39
USP28-213ENST00000544967 NUCB1Q02818 461 aa6.34□□□□□ -1.39
USP28-213ENST00000544967 ZNF530Q6P9A1 599 aaPredicted RBP6.34□□□□□ -1.39
USP28-213ENST00000544967 YY1AP1Q9H869 796 aa6.34□□□□□ -1.39
USP28-213ENST00000544967 ZNF646O15015 1829 aaPredicted RBP6.34□□□□□ -1.39
USP28-213ENST00000544967 UNCXA6NJT0 531 aa6.34□□□□□ -1.4
USP28-213ENST00000544967 LRP10Q7Z4F1 713 aa6.34□□□□□ -1.4
USP28-213ENST00000544967 MYH3P11055 1940 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 TULP2O00295 520 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 ZKSCAN2Q63HK3 967 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 SPINK5Q9NQ38 1064 aaPredicted RBP6.33□□□□□ -1.4
USP28-213ENST00000544967 IFT57Q9NWB7 429 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 PANK1Q8TE04 598 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 SLC4A9Q96Q91 983 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 APAF1O14727 1248 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 U2AF1L5P0DN76 240 aaPredicted RBP6.33□□□□□ -1.4
USP28-213ENST00000544967 U2AF1Q01081 240 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP28-213ENST00000544967 RETREG2Q8NC44 543 aa6.33□□□□□ -1.4
USP28-213ENST00000544967 ZC3H15Q8WU90 426 aaKnown RBP6.33□□□□□ -1.4
USP28-213ENST00000544967 GCC1Q96CN9 775 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms