RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FBXO31Q5XUX0 539 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 VSIG10Q8N0Z9 540 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 C2orf69Q8N8R5 385 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 CCDC12Q8WUD4 166 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 TAF4BQ92750 862 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 TUBB2BQ9BVA1 445 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 NBPF3Q9H094 633 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 KDM5DQ9BY66 1539 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 NEK4P51957 841 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 CALCOCO1Q9P1Z2 691 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 KDM5BQ9UGL1 1544 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 URB2Q14146 1524 aaKnown RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 SURF6O75683 361 aaKnown RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 IBSPP21815 317 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 HDAC1Q13547 482 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 RBM26Q5T8P6 1007 aaKnown RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 ATL3Q6DD88 541 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 TMEM132EQ6IEE7 984 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 SNX21Q969T3 373 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 TUBBP07437 444 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 STX1AQ16623 288 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 SPTY2D1Q68D10 685 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 SRRTQ9BXP5 876 aaKnown RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 RAB34Q9BZG1 259 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 ZSCAN16Q9H4T2 348 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 GPHNQ9NQX3 736 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 RMND1Q9NWS8 449 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 HYPKQ9NX55 129 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 ATF5Q9Y2D1 282 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 POLR3AO14802 1390 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 UQCRHLA0A096LP55 91 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 GNPATO15228 680 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 UQCRHP07919 91 aa9.06□□□□□ -0.96
VPS13D-211ENST00000543710 IFIT1P09914 478 aaKnown RBP9.06□□□□□ -0.96
VPS13D-211ENST00000543710 PTCD1O75127 700 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 FKBP15Q5T1M5 1219 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 ARMC9Q7Z3E5 817 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 UPF3BQ9BZI7 483 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 BABAM1Q9NWV8 329 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 DYNC1I1O14576 645 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 TRPM2O94759 1503 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 VPS36Q86VN1 386 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 LBHD1Q9BQE6 289 aaPredicted RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 TTC12Q9H892 705 aaPredicted RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 CSADQ9Y600 493 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 STK24Q9Y6E0 443 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 CTAGE1Q96RT6 745 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 NAA15Q9BXJ9 866 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 VEZTQ9HBM0 779 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 PICK1Q9NRD5 415 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 PLCH2O75038 1416 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 HSPA1LP34931 641 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 LARP1BQ659C4 914 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 SEPT12Q8IYM1 358 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 EVI5LQ96CN4 794 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 NEUROD6Q96NK8 337 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 AOX1Q06278 1338 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 CKAP4Q07065 602 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 CHRNA2Q15822 529 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 TNPO1Q92973 898 aaKnown RBP9.05□□□□□ -0.96
VPS13D-211ENST00000543710 CABP1Q9NZU7 370 aa9.05□□□□□ -0.96
VPS13D-211ENST00000543710 WASLO00401 505 aaPredicted RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 AMPD3Q01432 767 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 DALRD3Q5D0E6 543 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 LARP1Q6PKG0 1096 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 ZBTB33Q86T24 672 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 NAP1L4Q99733 375 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 KIF5CO60282 957 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 KRT18P05783 430 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 SKIV2LQ15477 1246 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 SEPT7Q16181 437 aaKnown RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 BMP2KLQ5H9B9 411 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 STXBP4Q6ZWJ1 553 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 UNC5CLQ8IV45 518 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 TMOD4Q9NZQ9 345 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 WWC3Q9ULE0 1092 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 ABCC10Q5T3U5 1492 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 NDC80O14777 642 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 CCDC172P0C7W6 258 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 TNFAIP1Q13829 316 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 CEP128Q6ZU80 1094 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 FMNL2Q96PY5 1086 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 HOXA7P31268 230 aaPredicted RBP9.04□□□□□ -0.96
VPS13D-211ENST00000543710 SYNMO15061 1565 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 ABCC2Q92887 1545 aa9.04□□□□□ -0.96
VPS13D-211ENST00000543710 MX1P20591 662 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 PPP1R2P41236 205 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 GSTO1P78417 241 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 TMCO3Q6UWJ1 677 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 ALS2CR12Q96Q35 445 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 STMN4Q9H169 189 aaPredicted RBP9.03□□□□□ -0.96
VPS13D-211ENST00000543710 TAOK3Q9H2K8 898 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 PRAG1Q86YV5 1406 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 RAD50Q92878 1312 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 USO1O60763 962 aaKnown RBP9.03□□□□□ -0.96
VPS13D-211ENST00000543710 HDGFL1Q5TGJ6 251 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 DZIP1Q86YF9 867 aaKnown RBP9.03□□□□□ -0.96
VPS13D-211ENST00000543710 GPATCH8Q9UKJ3 1502 aaKnown RBP9.03□□□□□ -0.96
VPS13D-211ENST00000543710 CNBD1Q8NA66 436 aa9.03□□□□□ -0.96
VPS13D-211ENST00000543710 SPA17Q15506 151 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms