RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 ALS2Q96Q42 1657 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 OFD1O75665 1012 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 RBM10P98175 930 aaKnown RBP17.79■□□□□ 0.44
DDX55-209ENST00000542286 NECAB1Q8N987 351 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 METTL22Q9BUU2 404 aaPredicted RBP17.79■□□□□ 0.44
DDX55-209ENST00000542286 RBSNQ9H1K0 784 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 TTC41PQ6P2S7 1318 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 NASPP49321 788 aaPredicted RBP17.79■□□□□ 0.44
DDX55-209ENST00000542286 TTC14Q96N46 770 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 PPP1R9BQ96SB3 815 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 STRN4Q9NRL3 753 aa17.79■□□□□ 0.44
DDX55-209ENST00000542286 SNRPA1P09661 255 aaKnown RBP17.78■□□□□ 0.44
DDX55-209ENST00000542286 TTLL7Q6ZT98 887 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 CCDC83Q8IWF9 413 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 A1BGP04217 495 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 KCNJ4P48050 445 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 TFCP2Q12800 502 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 ZNF589Q86UQ0 364 aaPredicted RBP17.78■□□□□ 0.44
DDX55-209ENST00000542286 RNF214Q8ND24 703 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 FSD1Q9BTV5 496 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 TCHHQ07283 1943 aa17.78■□□□□ 0.44
DDX55-209ENST00000542286 A0A087WZG4 1122 aa17.77■□□□□ 0.44
DDX55-209ENST00000542286 NBPF26B4DH59 902 aa17.77■□□□□ 0.44
DDX55-209ENST00000542286 NBPF14Q5TI25 921 aa17.77■□□□□ 0.44
DDX55-209ENST00000542286 NBPF10Q6P3W6 841 aaKnown RBP17.77■□□□□ 0.44
DDX55-209ENST00000542286 TOM1L2Q6ZVM7 507 aa17.77■□□□□ 0.44
DDX55-209ENST00000542286 NBPF15Q8N660 670 aa17.77■□□□□ 0.44
DDX55-209ENST00000542286 DCAF5Q96JK2 942 aa17.77■□□□□ 0.43
DDX55-209ENST00000542286 CHMP4AQ9BY43 222 aa17.77■□□□□ 0.43
DDX55-209ENST00000542286 PRDM11Q9NQV5 511 aa17.77■□□□□ 0.43
DDX55-209ENST00000542286 USP42Q9H9J4 1324 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 MCM2P49736 904 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 ZBTB3Q9H5J0 574 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 RBM8AQ9Y5S9 174 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 CAMTA1Q9Y6Y1 1673 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 MSNP26038 577 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 CCDC129Q6ZRS4 1044 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 ANP32BQ92688 251 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 FMNL2Q96PY5 1086 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 SEC62Q99442 399 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 DBNLQ9UJU6 430 aaKnown RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 RPAP1Q9BWH6 1393 aaPredicted RBP17.76■□□□□ 0.43
DDX55-209ENST00000542286 SPATA31A3Q5VYP0 1347 aa17.76■□□□□ 0.43
DDX55-209ENST00000542286 BRINP3Q76B58 766 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 GPATCH3Q96I76 525 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 CCDC85AQ96PX6 553 aaPredicted RBP17.75■□□□□ 0.43
DDX55-209ENST00000542286 DNAJC2Q99543 621 aaKnown RBP17.75■□□□□ 0.43
DDX55-209ENST00000542286 UTYO14607 1347 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 SCN11AQ9UI33 1791 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 ERC1Q8IUD2 1116 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 EVI5LQ96CN4 794 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 CNPY2Q9Y2B0 182 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 OVOS2A0A0G2JMS6 1433 aa17.75■□□□□ 0.43
DDX55-209ENST00000542286 PTMSP20962 102 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 PTPN12Q05209 780 aaKnown RBP17.74■□□□□ 0.43
DDX55-209ENST00000542286 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.74■□□□□ 0.43
DDX55-209ENST00000542286 CADPS2Q86UW7 1296 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 CCDC171Q6TFL3 1326 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 ST3GAL1Q11201 340 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 DBNDD2Q9BQY9 259 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 TNS3Q68CZ2 1445 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 LMBR1LQ6UX01 489 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 USP48Q86UV5 1035 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 ZNF594Q96JF6 807 aaPredicted RBP17.74■□□□□ 0.43
DDX55-209ENST00000542286 PDRG1Q9NUG6 133 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 FAM13BQ9NYF5 915 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 PRDM4Q9UKN5 801 aa17.74■□□□□ 0.43
DDX55-209ENST00000542286 CREB3L3Q68CJ9 461 aa17.73■□□□□ 0.43
DDX55-209ENST00000542286 INTS4Q96HW7 963 aaKnown RBP17.73■□□□□ 0.43
DDX55-209ENST00000542286 COL18A1P39060 1754 aa17.73■□□□□ 0.43
DDX55-209ENST00000542286 KIF1AQ12756 1690 aa17.73■□□□□ 0.43
DDX55-209ENST00000542286 SYT1P21579 422 aa17.73■□□□□ 0.43
DDX55-209ENST00000542286 RFX5P48382 616 aaPredicted RBP17.73■□□□□ 0.43
DDX55-209ENST00000542286 DDX46Q7L014 1031 aaKnown RBP17.73■□□□□ 0.43
DDX55-209ENST00000542286 LIMCH1Q9UPQ0 1083 aa17.73■□□□□ 0.43
DDX55-209ENST00000542286 KAT6BQ8WYB5 2073 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 PODXL2Q9NZ53 605 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 TERF1P54274 439 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 STK3Q13188 491 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 NECTIN1Q15223 517 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 ME3Q16798 604 aa17.72■□□□□ 0.43
DDX55-209ENST00000542286 RUFY2Q8WXA3 655 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 R3HCC1Q9Y3T6 440 aaKnown RBP17.71■□□□□ 0.43
DDX55-209ENST00000542286 FIBPO43427 364 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 ZNF445P59923 1031 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 FAM173BQ6P4H8 233 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 MPNDQ8N594 471 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 TPCN1Q9ULQ1 816 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 COL15A1P39059 1388 aa17.71■□□□□ 0.43
DDX55-209ENST00000542286 SLC27A2O14975 620 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 GJB2P29033 226 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 TIMM10P62072 90 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 TNNI3KQ59H18 835 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 SMC3Q9UQE7 1217 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 FPGT-TNNI3KV9GXZ4 949 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 ADAMTS7Q9UKP4 1686 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 PPFIA3O75145 1194 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 FERMT3Q86UX7 667 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 IL17RAQ96F46 866 aa17.7■□□□□ 0.42
DDX55-209ENST00000542286 NEUROD6Q96NK8 337 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms