RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 BRD2P25440 801 aaKnown RBP5.93□□□□□ -1.46
USP28-210ENST00000542033 ARSDP51689 593 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 NAA30Q147X3 362 aaPredicted RBP5.93□□□□□ -1.46
USP28-210ENST00000542033 NEDD1Q8NHV4 660 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 IFT43Q96FT9 208 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 STRN4Q9NRL3 753 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 RNF225M0QZC1 329 aaPredicted RBP5.92□□□□□ -1.46
USP28-210ENST00000542033 ARHGEF15O94989 841 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 ARID4AP29374 1257 aaPredicted RBP5.92□□□□□ -1.46
USP28-210ENST00000542033 IDH3AP50213 366 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 MARSP56192 900 aaKnown RBP5.92□□□□□ -1.46
USP28-210ENST00000542033 SPEM2Q0P670 501 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 SFSWAPQ12872 951 aaKnown RBP5.92□□□□□ -1.46
USP28-210ENST00000542033 COX20Q5RI15 118 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 GALNT6Q8NCL4 622 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 C11orf16Q9NQ32 467 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 FAM13BQ9NYF5 915 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 GGA1Q9UJY5 639 aa5.92□□□□□ -1.46
USP28-210ENST00000542033 DNMT3AQ9Y6K1 912 aaPredicted RBP5.92□□□□□ -1.46
USP28-210ENST00000542033 NEURL1BA8MQ27 555 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 MICAL2O94851 1124 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 SCNN1AP37088 669 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 PHLDB3Q6NSJ2 640 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 CAPN12Q6ZSI9 719 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 PODNQ7Z5L7 613 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 SYT9Q86SS6 491 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 ABTB2Q8N961 1025 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 EDARADDQ8WWZ3 215 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 SCARF2Q96GP6 870 aaPredicted RBP5.91□□□□□ -1.46
USP28-210ENST00000542033 PNMA5Q96PV4 448 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 SEPT3Q9UH03 358 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 DMGDHQ9UI17 866 aaKnown RBP5.91□□□□□ -1.46
USP28-210ENST00000542033 LRFN2Q9ULH4 789 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 ADAMTS8Q9UP79 889 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 BCS1LQ9Y276 419 aa5.91□□□□□ -1.46
USP28-210ENST00000542033 SIN3BO75182 1162 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 ABL1P00519 1130 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 AMPD1P23109 780 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 INPP5BP32019 993 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 PCBP4P57723 403 aaKnown RBP5.9□□□□□ -1.46
USP28-210ENST00000542033 TREML1Q86YW5 311 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 CCER1Q8TC90 406 aaPredicted RBP5.9□□□□□ -1.46
USP28-210ENST00000542033 SAP130Q9H0E3 1048 aa5.9□□□□□ -1.46
USP28-210ENST00000542033 PATL2C9JE40 543 aaKnown RBP5.89□□□□□ -1.47
USP28-210ENST00000542033 PIK3R2O00459 728 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 EPXP11678 715 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 ALAS2P22557 587 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 CCINQ13939 588 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 GTF3C2Q8WUA4 911 aaPredicted RBP5.89□□□□□ -1.47
USP28-210ENST00000542033 SLC30A3Q99726 388 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 STIM2Q9P246 746 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 HCN2Q9UL51 889 aa5.89□□□□□ -1.47
USP28-210ENST00000542033 ELOA3CA0A087WX78 387 aaPredicted RBP5.88□□□□□ -1.47
USP28-210ENST00000542033 ELOA3DA6NLF2 546 aaPredicted RBP5.88□□□□□ -1.47
USP28-210ENST00000542033 PHF20L1A8MW92 1017 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 KCNA1Q09470 495 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 ELOA3BQ3SY89 546 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 AEBP1Q8IUX7 1158 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 KCTD17Q8N5Z5 321 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 ELOA3Q8NG57 546 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 HELQQ8TDG4 1101 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 BHMTQ93088 406 aa5.88□□□□□ -1.47
USP28-210ENST00000542033 ADARB2-AS1A8MUL3 147 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 SHISA8B8ZZ34 492 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 TNFRSF10BO14763 440 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 SERPINB4P48594 390 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 PCSK7Q16549 785 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 FCHSD1Q86WN1 690 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 ETFBKMTQ8IXQ9 262 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 BEND7Q8N7W2 519 aaPredicted RBP5.87□□□□□ -1.47
USP28-210ENST00000542033 PIK3R5Q8WYR1 880 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 TNFRSF25Q93038 417 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 GSX2Q9BZM3 304 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 RRAGCQ9HB90 399 aa5.87□□□□□ -1.47
USP28-210ENST00000542033 RTCBQ9Y3I0 505 aaKnown RBP5.87□□□□□ -1.47
USP28-210ENST00000542033 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.87□□□□□ -1.47
USP28-210ENST00000542033 ZNF211Q13398 564 aaPredicted RBP5.86□□□□□ -1.47
USP28-210ENST00000542033 SF3B2Q13435 895 aaKnown RBP5.86□□□□□ -1.47
USP28-210ENST00000542033 GRIN2CQ14957 1233 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 KANK3Q6NY19 840 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 C1orf229Q6ZS94 237 aaPredicted RBP5.86□□□□□ -1.47
USP28-210ENST00000542033 RAB44Q7Z6P3 723 aaPredicted RBP5.86□□□□□ -1.47
USP28-210ENST00000542033 TXNDC2Q86VQ3 553 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 RGL4Q8IZJ4 473 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 CMTR1Q8N1G2 835 aaKnown RBP5.86□□□□□ -1.47
USP28-210ENST00000542033 BTBD6Q96KE9 485 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 ANO2Q9NQ90 1003 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 KLF15Q9UIH9 416 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 MKL2Q9ULH7 1088 aa5.86□□□□□ -1.47
USP28-210ENST00000542033 OPLAHO14841 1288 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 EGFRP00533 1210 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 RPLP1P05386 114 aaKnown RBP5.85□□□□□ -1.47
USP28-210ENST00000542033 NFKB1P19838 968 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 ADH7P40394 386 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 ZAP70P43403 619 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 FKBP4Q02790 459 aaKnown RBP eCLIP5.85□□□□□ -1.47
USP28-210ENST00000542033 KCNMA1Q12791 1236 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 MTMR3Q13615 1198 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 CHSY3Q70JA7 882 aa5.85□□□□□ -1.47
USP28-210ENST00000542033 GLYCTKQ8IVS8 523 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms