RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 HOXA10P31260 410 aaPredicted RBP18.54■□□□□ 0.56
SNHG1-213ENST00000540725 IARSP41252 1262 aaKnown RBP18.54■□□□□ 0.56
SNHG1-213ENST00000540725 PROSER3Q2NL68 480 aa18.54■□□□□ 0.56
SNHG1-213ENST00000540725 LAMB2P55268 1798 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 ANXA1P04083 346 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 PARP10Q53GL7 1025 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 CC2D2BQ6DHV5 1058 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 PPP1R42Q7Z4L9 355 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 CCDC146Q8IYE0 955 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 PSMD1Q99460 953 aa18.53■□□□□ 0.56
SNHG1-213ENST00000540725 TAF1DQ9H5J8 278 aaPredicted RBP18.53■□□□□ 0.56
SNHG1-213ENST00000540725 NEUROD2Q15784 382 aa18.52■□□□□ 0.55
SNHG1-213ENST00000540725 FZD9O00144 591 aa18.51■□□□□ 0.55
SNHG1-213ENST00000540725 C3orf67Q6ZVT6 689 aa18.51■□□□□ 0.55
SNHG1-213ENST00000540725 LDHDQ86WU2 507 aa18.51■□□□□ 0.55
SNHG1-213ENST00000540725 RBM17Q96I25 401 aaKnown RBP18.51■□□□□ 0.55
SNHG1-213ENST00000540725 CRAMP1Q96RY5 1269 aa18.51■□□□□ 0.55
SNHG1-213ENST00000540725 ADAMTSL1Q8N6G6 1762 aa18.5■□□□□ 0.55
SNHG1-213ENST00000540725 COL4A5P29400 1685 aa18.5■□□□□ 0.55
SNHG1-213ENST00000540725 NECTIN2Q92692 538 aa18.5■□□□□ 0.55
SNHG1-213ENST00000540725 HACL1Q9UJ83 578 aa18.5■□□□□ 0.55
SNHG1-213ENST00000540725 PPEF1O14829 653 aaPredicted RBP18.49■□□□□ 0.55
SNHG1-213ENST00000540725 WDR43Q15061 677 aaKnown RBP eCLIP18.49■□□□□ 0.55
SNHG1-213ENST00000540725 JDP2Q8WYK2 163 aa18.49■□□□□ 0.55
SNHG1-213ENST00000540725 RUNDC1Q96C34 613 aa18.49■□□□□ 0.55
SNHG1-213ENST00000540725 UTP14AQ9BVJ6 771 aaKnown RBP18.49■□□□□ 0.55
SNHG1-213ENST00000540725 CREBZFQ9NS37 354 aa18.49■□□□□ 0.55
SNHG1-213ENST00000540725 CHL1O00533 1208 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 GRIPAP1Q4V328 841 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 EAPPQ56P03 285 aaPredicted RBP18.48■□□□□ 0.55
SNHG1-213ENST00000540725 COPS6Q7L5N1 327 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 SLC51AQ86UW1 340 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 XAGE3Q8WTP9 111 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 NLRP3Q96P20 1036 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 TRIM35Q9UPQ4 493 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 RNF123Q5XPI4 1314 aa18.48■□□□□ 0.55
SNHG1-213ENST00000540725 TCERG1O14776 1098 aaKnown RBP18.47■□□□□ 0.55
SNHG1-213ENST00000540725 EPHX2P34913 555 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 AIMP1Q12904 312 aaKnown RBP18.47■□□□□ 0.55
SNHG1-213ENST00000540725 KRT24Q2M2I5 525 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 HSP90AB3PQ58FF7 597 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 SLC10A5Q5PT55 438 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 GPC2Q8N158 579 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 DDX21Q9NR30 783 aaKnown RBP eCLIP18.47■□□□□ 0.551e-323■■■□□ 15.6
SNHG1-213ENST00000540725 LAS1LQ9Y4W2 734 aaKnown RBP18.47■□□□□ 0.55
SNHG1-213ENST00000540725 PASKQ96RG2 1323 aa18.47■□□□□ 0.55
SNHG1-213ENST00000540725 TAF1P21675 1872 aa18.46■□□□□ 0.55
SNHG1-213ENST00000540725 HSPA1AP0DMV8 641 aaKnown RBP18.45■□□□□ 0.54
SNHG1-213ENST00000540725 HSPA1BP0DMV9 641 aaKnown RBP18.45■□□□□ 0.54
SNHG1-213ENST00000540725 EIF6P56537 245 aaKnown RBP18.45■□□□□ 0.54
SNHG1-213ENST00000540725 COL13A1Q5TAT6 717 aaPredicted RBP18.45■□□□□ 0.54
SNHG1-213ENST00000540725 NLRP10Q86W26 655 aa18.45■□□□□ 0.54
SNHG1-213ENST00000540725 LARGE2Q8N3Y3 721 aa18.45■□□□□ 0.54
SNHG1-213ENST00000540725 ADAMTS8Q9UP79 889 aa18.45■□□□□ 0.54
SNHG1-213ENST00000540725 CLEC11AQ9Y240 323 aa18.45■□□□□ 0.54
SNHG1-213ENST00000540725 LTBP1Q14766 1721 aa18.45■□□□□ 0.54
SNHG1-213ENST00000540725 ABCC4O15439 1325 aa18.44■□□□□ 0.54
SNHG1-213ENST00000540725 PNMA8AQ86V59 439 aaPredicted RBP18.44■□□□□ 0.54
SNHG1-213ENST00000540725 MKRN1Q9UHC7 482 aaKnown RBP18.44■□□□□ 0.54
SNHG1-213ENST00000540725 GJA3Q9Y6H8 435 aa18.44■□□□□ 0.54
SNHG1-213ENST00000540725 ITGBL1O95965 494 aaPredicted RBP18.43■□□□□ 0.54
SNHG1-213ENST00000540725 TCIRG1Q13488 830 aa18.43■□□□□ 0.54
SNHG1-213ENST00000540725 TMX4Q9H1E5 349 aaPredicted RBP18.43■□□□□ 0.54
SNHG1-213ENST00000540725 CHPF2Q9P2E5 772 aa18.43■□□□□ 0.54
SNHG1-213ENST00000540725 ATP6V0A2Q9Y487 856 aa18.43■□□□□ 0.54
SNHG1-213ENST00000540725 DDX60Q8IY21 1712 aaKnown RBP18.43■□□□□ 0.54
SNHG1-213ENST00000540725 HCLS1P14317 486 aaPredicted RBP18.42■□□□□ 0.54
SNHG1-213ENST00000540725 HDGFL1Q5TGJ6 251 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 TRMT112Q9UI30 125 aaKnown RBP18.42■□□□□ 0.54
SNHG1-213ENST00000540725 CNTNAP1P78357 1384 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 SH3TC1Q8TE82 1336 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 PPIP5K2O43314 1243 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 HOXB7P09629 217 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 NIM1KQ8IY84 436 aa18.42■□□□□ 0.54
SNHG1-213ENST00000540725 TMEM88BA6NKF7 163 aa18.41■□□□□ 0.54
SNHG1-213ENST00000540725 LMOD1P29536 600 aaPredicted RBP18.41■□□□□ 0.54
SNHG1-213ENST00000540725 MAP1SQ66K74 1059 aaPredicted RBP18.41■□□□□ 0.54
SNHG1-213ENST00000540725 PRKRIP1Q9H875 184 aaPredicted RBP18.41■□□□□ 0.54
SNHG1-213ENST00000540725 BBOX1O75936 387 aa18.4■□□□□ 0.54
SNHG1-213ENST00000540725 AOC3Q16853 763 aa18.4■□□□□ 0.54
SNHG1-213ENST00000540725 CNTROBQ8N137 903 aa18.4■□□□□ 0.54
SNHG1-213ENST00000540725 PLBD2Q8NHP8 589 aa18.4■□□□□ 0.54
SNHG1-213ENST00000540725 CFAP44Q96MT7 982 aa18.4■□□□□ 0.54
SNHG1-213ENST00000540725 DBF4Q9UBU7 674 aaPredicted RBP18.4■□□□□ 0.54
SNHG1-213ENST00000540725 LRRC37AA6NMS7 1700 aa18.39■□□□□ 0.53
SNHG1-213ENST00000540725 SCNN1DP51172 638 aa18.39■□□□□ 0.53
SNHG1-213ENST00000540725 DDX46Q7L014 1031 aaKnown RBP18.39■□□□□ 0.53
SNHG1-213ENST00000540725 SUPT20HQ8NEM7 779 aa18.39■□□□□ 0.53
SNHG1-213ENST00000540725 VPS33BQ9H267 617 aa18.39■□□□□ 0.53
SNHG1-213ENST00000540725 TRPM7Q96QT4 1865 aa18.39■□□□□ 0.53
SNHG1-213ENST00000540725 EPS15P42566 896 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 DUSP27Q5VZP5 1158 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 DPP8Q6V1X1 898 aaPredicted RBP18.38■□□□□ 0.53
SNHG1-213ENST00000540725 ANKRD13DQ6ZTN6 518 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 SP8Q8IXZ3 490 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 ZNF428Q96B54 188 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 RTFDC1Q9BY42 306 aaPredicted RBP18.38■□□□□ 0.53
SNHG1-213ENST00000540725 MBIPQ9NS73 344 aa18.38■□□□□ 0.53
SNHG1-213ENST00000540725 GRAPQ13588 217 aa18.37■□□□□ 0.53
SNHG1-213ENST00000540725 TNS4Q8IZW8 715 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms