RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 CAMKK2Q96RR4 588 aa20.85■□□□□ 0.93
COPS3-212ENST00000539941 APBB1O00213 710 aa20.84■□□□□ 0.93
COPS3-212ENST00000539941 EIF5P55010 431 aaKnown RBP20.84■□□□□ 0.93
COPS3-212ENST00000539941 RABL6Q3YEC7 729 aaPredicted RBP20.84■□□□□ 0.93
COPS3-212ENST00000539941 KIF1BPQ96EK5 621 aa20.84■□□□□ 0.93
COPS3-212ENST00000539941 SBF2Q86WG5 1849 aa20.84■□□□□ 0.93
COPS3-212ENST00000539941 ANKRD36CQ5JPF3 1778 aa20.84■□□□□ 0.93
COPS3-212ENST00000539941 SMARCA5O60264 1052 aaPredicted RBP20.83■□□□□ 0.93
COPS3-212ENST00000539941 APBA3O96018 575 aa20.83■□□□□ 0.93
COPS3-212ENST00000539941 EZH2Q15910 746 aaKnown RBP20.83■□□□□ 0.93
COPS3-212ENST00000539941 ERC1Q8IUD2 1116 aa20.83■□□□□ 0.93
COPS3-212ENST00000539941 OSBPL3Q9H4L5 887 aa20.83■□□□□ 0.92
COPS3-212ENST00000539941 DZIP3Q86Y13 1208 aaKnown RBP20.82■□□□□ 0.92
COPS3-212ENST00000539941 C16orf71Q8IYS4 520 aaPredicted RBP20.81■□□□□ 0.92
COPS3-212ENST00000539941 RHPN1Q8TCX5 695 aa20.81■□□□□ 0.92
COPS3-212ENST00000539941 MYH14Q7Z406 1995 aaKnown RBP20.81■□□□□ 0.92
COPS3-212ENST00000539941 TNS1Q9HBL0 1735 aaKnown RBP20.81■□□□□ 0.92
COPS3-212ENST00000539941 TTC22Q5TAA0 569 aa20.8■□□□□ 0.92
COPS3-212ENST00000539941 IPO9Q96P70 1041 aaKnown RBP20.8■□□□□ 0.92
COPS3-212ENST00000539941 SALL3Q9BXA9 1300 aa20.8■□□□□ 0.92
COPS3-212ENST00000539941 CNTNAP4Q9C0A0 1308 aa20.8■□□□□ 0.92
COPS3-212ENST00000539941 NUP98P52948 1817 aa20.8■□□□□ 0.92
COPS3-212ENST00000539941 EPHA10Q5JZY3 1008 aa20.8■□□□□ 0.92
COPS3-212ENST00000539941 PCCAP05165 728 aaPredicted RBP20.79■□□□□ 0.92
COPS3-212ENST00000539941 OTUD7AQ8TE49 926 aaPredicted RBP20.79■□□□□ 0.92
COPS3-212ENST00000539941 ARXQ96QS3 562 aa20.79■□□□□ 0.92
COPS3-212ENST00000539941 AOX1Q06278 1338 aa20.79■□□□□ 0.92
COPS3-212ENST00000539941 LY75O60449 1722 aa20.78■□□□□ 0.92
COPS3-212ENST00000539941 PDE1AP54750 535 aa20.78■□□□□ 0.92
COPS3-212ENST00000539941 OS9Q13438 667 aaPredicted RBP20.78■□□□□ 0.92
COPS3-212ENST00000539941 COPRSQ9NQ92 184 aa20.78■□□□□ 0.92
COPS3-212ENST00000539941 STAP2Q9UGK3 403 aa20.78■□□□□ 0.92
COPS3-212ENST00000539941 HLFQ16534 295 aa20.77■□□□□ 0.92
COPS3-212ENST00000539941 RC3H1Q5TC82 1133 aaKnown RBP20.77■□□□□ 0.92
COPS3-212ENST00000539941 PTF1AQ7RTS3 328 aa20.77■□□□□ 0.92
COPS3-212ENST00000539941 BCL11BQ9C0K0 894 aaPredicted RBP20.77■□□□□ 0.92
COPS3-212ENST00000539941 CDHR2Q9BYE9 1310 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 RGL2O15211 777 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 MX1P20591 662 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 FOXO4P98177 505 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 G3BP1Q13283 466 aaKnown RBP eCLIP20.77■□□□□ 0.91
COPS3-212ENST00000539941 NLRP10Q86W26 655 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 ZBTB38Q8NAP3 1195 aaPredicted RBP20.77■□□□□ 0.91
COPS3-212ENST00000539941 LINC00116Q8NCU8 138 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 PLA2G12BQ9BX93 195 aa20.77■□□□□ 0.91
COPS3-212ENST00000539941 EIF5BO60841 1220 aaKnown RBP20.76■□□□□ 0.91
COPS3-212ENST00000539941 GSPT1P15170 499 aaKnown RBP20.76■□□□□ 0.91
COPS3-212ENST00000539941 NBR1Q14596 966 aa20.76■□□□□ 0.91
COPS3-212ENST00000539941 JARID2Q92833 1246 aaPredicted RBP20.76■□□□□ 0.91
COPS3-212ENST00000539941 TBC1D2BQ9UPU7 963 aa20.76■□□□□ 0.91
COPS3-212ENST00000539941 PSDA5PKW4 1024 aaPredicted RBP20.75■□□□□ 0.91
COPS3-212ENST00000539941 RFX5P48382 616 aaPredicted RBP20.75■□□□□ 0.91
COPS3-212ENST00000539941 UPF2Q9HAU5 1272 aaKnown RBP20.75■□□□□ 0.91
COPS3-212ENST00000539941 PA2G4Q9UQ80 394 aaKnown RBP20.75■□□□□ 0.91
COPS3-212ENST00000539941 LMBR1LQ6UX01 489 aa20.74■□□□□ 0.91
COPS3-212ENST00000539941 ZNF34Q8IZ26 560 aa20.74■□□□□ 0.91
COPS3-212ENST00000539941 CLASRPQ8N2M8 674 aaKnown RBP20.74■□□□□ 0.91
COPS3-212ENST00000539941 IL1RAPL2Q9NP60 686 aa20.74■□□□□ 0.91
COPS3-212ENST00000539941 CAMTA2O94983 1202 aa20.73■□□□□ 0.91
COPS3-212ENST00000539941 BCORQ6W2J9 1755 aa20.73■□□□□ 0.91
COPS3-212ENST00000539941 CDC45O75419 566 aa20.73■□□□□ 0.91
COPS3-212ENST00000539941 CCNL1Q9UK58 526 aaPredicted RBP20.73■□□□□ 0.91
COPS3-212ENST00000539941 USP42Q9H9J4 1324 aaKnown RBP20.72■□□□□ 0.91
COPS3-212ENST00000539941 PLSCR1O15162 318 aa20.72■□□□□ 0.91
COPS3-212ENST00000539941 PTPN12Q05209 780 aaKnown RBP20.72■□□□□ 0.91
COPS3-212ENST00000539941 ZNF652Q9Y2D9 606 aa20.72■□□□□ 0.91
COPS3-212ENST00000539941 TAF1LQ8IZX4 1826 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 SEC24BO95487 1268 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 GPTP24298 496 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 R3HDM1Q15032 1099 aaKnown RBP20.71■□□□□ 0.91
COPS3-212ENST00000539941 PARP10Q53GL7 1025 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 CLEC4GQ6UXB4 293 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 TUBGCP6Q96RT7 1819 aa20.71■□□□□ 0.91
COPS3-212ENST00000539941 SASH1O94885 1247 aa20.7■□□□□ 0.91
COPS3-212ENST00000539941 TTC41PQ6P2S7 1318 aa20.7■□□□□ 0.9
COPS3-212ENST00000539941 RPS6KA4O75676 772 aa20.7■□□□□ 0.9
COPS3-212ENST00000539941 SDSP20132 328 aa20.7■□□□□ 0.9
COPS3-212ENST00000539941 FAM89AQ96GI7 184 aa20.7■□□□□ 0.9
COPS3-212ENST00000539941 AK7Q96M32 723 aa20.7■□□□□ 0.9
COPS3-212ENST00000539941 TRMT112Q9UI30 125 aaKnown RBP20.69■□□□□ 0.9
COPS3-212ENST00000539941 UBN2Q6ZU65 1347 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 CSF1RP07333 972 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 HMGB2P26583 209 aaKnown RBP20.68■□□□□ 0.9
COPS3-212ENST00000539941 TBC1D9Q6ZT07 1266 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 NUTM1Q86Y26 1132 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 PROM2Q8N271 834 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 GPATCH3Q96I76 525 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 FBXO3Q9UK99 471 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 CHMP3Q9Y3E7 222 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 SCN7AQ01118 1682 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 MYH3P11055 1940 aa20.68■□□□□ 0.9
COPS3-212ENST00000539941 IFIT2P09913 472 aaKnown RBP20.67■□□□□ 0.9
COPS3-212ENST00000539941 KLHDC4Q8TBB5 520 aa20.67■□□□□ 0.9
COPS3-212ENST00000539941 SIL1Q9H173 461 aa20.67■□□□□ 0.9
COPS3-212ENST00000539941 HSP90B1P14625 803 aaKnown RBP20.67■□□□□ 0.9
COPS3-212ENST00000539941 CASC1Q6TDU7 716 aa20.67■□□□□ 0.9
COPS3-212ENST00000539941 C4BP0C0L5 1744 aa20.66■□□□□ 0.9
COPS3-212ENST00000539941 IRS4O14654 1257 aaPredicted RBP20.66■□□□□ 0.9
COPS3-212ENST00000539941 ERC2O15083 957 aa20.66■□□□□ 0.9
COPS3-212ENST00000539941 CIAO1O76071 339 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms