RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 ANP32CO43423 234 aa13.48□□□□□ -0.25
CSDE1-217ENST00000534699 RPGRQ92834 1020 aaKnown RBP13.48□□□□□ -0.25
CSDE1-217ENST00000534699 NLRP3Q96P20 1036 aa13.48□□□□□ -0.25
CSDE1-217ENST00000534699 TMX4Q9H1E5 349 aaPredicted RBP13.48□□□□□ -0.25
CSDE1-217ENST00000534699 L3MBTL3Q96JM7 780 aaPredicted RBP13.47□□□□□ -0.25
CSDE1-217ENST00000534699 LRRC37AA6NMS7 1700 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 C21orf2O43822 256 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 MYL6BP14649 208 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 HDGFL1Q5TGJ6 251 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 CCDC146Q8IYE0 955 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 IQCA1LA6NCM1 817 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 BBOX1O75936 387 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 SUSD4Q5VX71 490 aa13.47□□□□□ -0.25
CSDE1-217ENST00000534699 UBN2Q6ZU65 1347 aa13.46□□□□□ -0.25
CSDE1-217ENST00000534699 RASSF7Q02833 373 aa13.46□□□□□ -0.25
CSDE1-217ENST00000534699 DUSP27Q5VZP5 1158 aa13.46□□□□□ -0.25
CSDE1-217ENST00000534699 ISCA1Q9BUE6 129 aa13.46□□□□□ -0.25
CSDE1-217ENST00000534699 EIF2S2P20042 333 aaKnown RBP13.46□□□□□ -0.26
CSDE1-217ENST00000534699 COPS6Q7L5N1 327 aa13.46□□□□□ -0.26
CSDE1-217ENST00000534699 APAF1O14727 1248 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 PIP4K2AP48426 406 aaPredicted RBP13.45□□□□□ -0.26
CSDE1-217ENST00000534699 ERFEQ4G0M1 354 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 CCDC30Q5VVM6 783 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 NLRP10Q86W26 655 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 WDR63Q8IWG1 891 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 DDX60Q8IY21 1712 aaKnown RBP13.45□□□□□ -0.26
CSDE1-217ENST00000534699 XAGE3Q8WTP9 111 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 MBIPQ9NS73 344 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 ABCC12Q96J65 1359 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 SH3TC1Q8TE82 1336 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 DDX58O95786 925 aaKnown RBP13.45□□□□□ -0.26
CSDE1-217ENST00000534699 ANKRD13DQ6ZTN6 518 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 ZBTB3Q9H5J0 574 aa13.45□□□□□ -0.26
CSDE1-217ENST00000534699 RTFDC1Q9BY42 306 aaPredicted RBP13.44□□□□□ -0.26
CSDE1-217ENST00000534699 NMRK2Q9NPI5 230 aa13.44□□□□□ -0.26
CSDE1-217ENST00000534699 WWC3Q9ULE0 1092 aa13.44□□□□□ -0.26
CSDE1-217ENST00000534699 IARSP41252 1262 aaKnown RBP13.43□□□□□ -0.26
CSDE1-217ENST00000534699 GOLGA2Q08379 1002 aa13.43□□□□□ -0.26
CSDE1-217ENST00000534699 SF3B3Q15393 1217 aaKnown RBP13.43□□□□□ -0.26
CSDE1-217ENST00000534699 SP8Q8IXZ3 490 aa13.43□□□□□ -0.26
CSDE1-217ENST00000534699 NEUROD2Q15784 382 aa13.43□□□□□ -0.26
CSDE1-217ENST00000534699 RRAGCQ9HB90 399 aa13.43□□□□□ -0.26
CSDE1-217ENST00000534699 ATP6V0A2Q9Y487 856 aa13.43□□□□□ -0.26
CSDE1-217ENST00000534699 FZD9O00144 591 aa13.42□□□□□ -0.26
CSDE1-217ENST00000534699 PRELPP51888 382 aa13.42□□□□□ -0.26
CSDE1-217ENST00000534699 ZNF526Q8TF50 670 aaPredicted RBP13.42□□□□□ -0.26
CSDE1-217ENST00000534699 CHPF2Q9P2E5 772 aa13.42□□□□□ -0.26
CSDE1-217ENST00000534699 CDHR2Q9BYE9 1310 aa13.42□□□□□ -0.26
CSDE1-217ENST00000534699 PPEF1O14829 653 aaPredicted RBP13.42□□□□□ -0.26
CSDE1-217ENST00000534699 SYNE4Q8N205 404 aa13.42□□□□□ -0.26
CSDE1-217ENST00000534699 CCDC191Q8NCU4 936 aa13.41□□□□□ -0.26
CSDE1-217ENST00000534699 LAS1LQ9Y4W2 734 aaKnown RBP13.41□□□□□ -0.26
CSDE1-217ENST00000534699 ADAMTSL1Q8N6G6 1762 aa13.41□□□□□ -0.26
CSDE1-217ENST00000534699 GPTP24298 496 aa13.4□□□□□ -0.26
CSDE1-217ENST00000534699 PROSER3Q2NL68 480 aa13.4□□□□□ -0.26
CSDE1-217ENST00000534699 DDX46Q7L014 1031 aaKnown RBP13.4□□□□□ -0.26
CSDE1-217ENST00000534699 JDP2Q8WYK2 163 aa13.4□□□□□ -0.26
CSDE1-217ENST00000534699 GRAPQ13588 217 aa13.4□□□□□ -0.26
CSDE1-217ENST00000534699 PNMA8AQ86V59 439 aaPredicted RBP13.4□□□□□ -0.26
CSDE1-217ENST00000534699 GPC2Q8N158 579 aa13.4□□□□□ -0.26
CSDE1-217ENST00000534699 GRAPLQ8TC17 118 aaPredicted RBP13.4□□□□□ -0.26
CSDE1-217ENST00000534699 TRMT112Q9UI30 125 aaKnown RBP13.4□□□□□ -0.26
CSDE1-217ENST00000534699 WWC1Q8IX03 1113 aa13.39□□□□□ -0.27
CSDE1-217ENST00000534699 EIF6P56537 245 aaKnown RBP13.39□□□□□ -0.27
CSDE1-217ENST00000534699 LDHDQ86WU2 507 aa13.39□□□□□ -0.27
CSDE1-217ENST00000534699 NUTM1Q86Y26 1132 aa13.39□□□□□ -0.27
CSDE1-217ENST00000534699 PCCAP05165 728 aaPredicted RBP13.38□□□□□ -0.27
CSDE1-217ENST00000534699 CCDC24Q8N4L8 307 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 ZBTB38Q8NAP3 1195 aaPredicted RBP13.38□□□□□ -0.27
CSDE1-217ENST00000534699 STK31Q9BXU1 1019 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 MRS2Q9HD23 443 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 MYH3P11055 1940 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 RTL9Q8NET4 1388 aa13.38□□□□□ -0.27
CSDE1-217ENST00000534699 RIC3Q7Z5B4 369 aa13.37□□□□□ -0.27
CSDE1-217ENST00000534699 METTL22Q9BUU2 404 aaPredicted RBP13.37□□□□□ -0.27
CSDE1-217ENST00000534699 ABCC4O15439 1325 aa13.37□□□□□ -0.27
CSDE1-217ENST00000534699 POTECB2RU33 542 aa13.37□□□□□ -0.27
CSDE1-217ENST00000534699 ZNF609O15014 1411 aa13.37□□□□□ -0.27
CSDE1-217ENST00000534699 HACL1Q9UJ83 578 aa13.37□□□□□ -0.27
CSDE1-217ENST00000534699 FAM177BA6PVY3 158 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 AIMP1Q12904 312 aaKnown RBP13.36□□□□□ -0.27
CSDE1-217ENST00000534699 KSR2Q6VAB6 950 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 LTBP1Q14766 1721 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 JMYQ8N9B5 988 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 MMP14P50281 582 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 NIM1KQ8IY84 436 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 MYH16Q9H6N6 1097 aa13.36□□□□□ -0.27
CSDE1-217ENST00000534699 CWC25Q9NXE8 425 aaPredicted RBP13.36□□□□□ -0.27
CSDE1-217ENST00000534699 NEXNQ0ZGT2 675 aa13.35□□□□□ -0.27
CSDE1-217ENST00000534699 MPNDQ8N594 471 aa13.35□□□□□ -0.27
CSDE1-217ENST00000534699 EYA3Q99504 573 aa13.35□□□□□ -0.27
CSDE1-217ENST00000534699 PDE8AO60658 829 aa13.35□□□□□ -0.27
CSDE1-217ENST00000534699 TAF1DQ9H5J8 278 aaPredicted RBP13.35□□□□□ -0.27
CSDE1-217ENST00000534699 KIAA2012Q0VF49 1180 aa13.34□□□□□ -0.27
CSDE1-217ENST00000534699 TNIP1Q15025 636 aa13.34□□□□□ -0.27
CSDE1-217ENST00000534699 USP50Q70EL3 339 aaPredicted RBP13.34□□□□□ -0.27
CSDE1-217ENST00000534699 DNAJC5GQ8N7S2 189 aa13.34□□□□□ -0.27
CSDE1-217ENST00000534699 C8orf58Q8NAV2 365 aa13.34□□□□□ -0.27
CSDE1-217ENST00000534699 PODXL2Q9NZ53 605 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms