RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 SGSM2O43147 1006 aa16.87■□□□□ 0.29
USP48-213ENST00000529637 RNMTO43148 476 aaKnown RBP16.87■□□□□ 0.29
USP48-213ENST00000529637 TTC14Q96N46 770 aa16.87■□□□□ 0.29
USP48-213ENST00000529637 FAM173BQ6P4H8 233 aa16.87■□□□□ 0.29
USP48-213ENST00000529637 GPATCH3Q96I76 525 aa16.87■□□□□ 0.29
USP48-213ENST00000529637 AOX1Q06278 1338 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 SLFN14P0C7P3 912 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 AACSQ86V21 672 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 VGLL3A8MV65 326 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 GLRX3O76003 335 aaKnown RBP16.86■□□□□ 0.29
USP48-213ENST00000529637 CASTP20810 708 aaKnown RBP16.86■□□□□ 0.29
USP48-213ENST00000529637 SMC3Q9UQE7 1217 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 CEMIPQ8WUJ3 1361 aa16.86■□□□□ 0.29
USP48-213ENST00000529637 MYL6BP14649 208 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 CCDC83Q8IWF9 413 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 CKAP2LQ8IYA6 745 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 TNNT1P13805 278 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 SLC39A6Q13433 755 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 AMOTQ4VCS5 1084 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 IL17RAQ96F46 866 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 FAM208AQ9UK61 1670 aaKnown RBP16.85■□□□□ 0.29
USP48-213ENST00000529637 HOXB7P09629 217 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 DDX41Q9UJV9 622 aaKnown RBP16.85■□□□□ 0.29
USP48-213ENST00000529637 MTMR6Q9Y217 621 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 MRVI1Q9Y6F6 885 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 RAD50Q92878 1312 aa16.85■□□□□ 0.29
USP48-213ENST00000529637 GOLGA6L6A8MZA4 724 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 CCDC192P0DO97 292 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 LIG1P18858 919 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 GJB2P29033 226 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 PRPF40BQ6NWY9 871 aaKnown RBP16.84■□□□□ 0.29
USP48-213ENST00000529637 RUFY2Q8WXA3 655 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 CCDC8Q9H0W5 538 aaPredicted RBP16.84■□□□□ 0.29
USP48-213ENST00000529637 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.84■□□□□ 0.29
USP48-213ENST00000529637 V9GYY5 206 aaPredicted RBP16.84■□□□□ 0.29
USP48-213ENST00000529637 RIC3Q7Z5B4 369 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 DRC7Q8IY82 874 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 NLRP2Q9NX02 1062 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 ADCY9O60503 1353 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 TUBGCP6Q96RT7 1819 aa16.84■□□□□ 0.29
USP48-213ENST00000529637 GIGYF1O75420 1035 aaPredicted RBP16.83■□□□□ 0.29
USP48-213ENST00000529637 G3BP1Q13283 466 aaKnown RBP eCLIP16.83■□□□□ 0.29
USP48-213ENST00000529637 KSR2Q6VAB6 950 aa16.83■□□□□ 0.29
USP48-213ENST00000529637 JAKMIP1Q96N16 626 aaKnown RBP16.83■□□□□ 0.29
USP48-213ENST00000529637 ECHDC1Q9NTX5 307 aa16.83■□□□□ 0.29
USP48-213ENST00000529637 LIMCH1Q9UPQ0 1083 aa16.83■□□□□ 0.29
USP48-213ENST00000529637 VPS37CA5D8V6 355 aaPredicted RBP16.83■□□□□ 0.28
USP48-213ENST00000529637 TPM3P06753 285 aa16.83■□□□□ 0.28
USP48-213ENST00000529637 FERMT3Q86UX7 667 aa16.83■□□□□ 0.28
USP48-213ENST00000529637 FAM200AQ8TCP9 573 aa16.83■□□□□ 0.28
USP48-213ENST00000529637 ZNF592Q92610 1267 aa16.83■□□□□ 0.28
USP48-213ENST00000529637 XRN1Q8IZH2 1706 aaKnown RBP16.83■□□□□ 0.28
USP48-213ENST00000529637 PXDNLA1KZ92 1463 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 SMTNL1A8MU46 457 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 TTC6Q86TZ1 520 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 LSG1Q9H089 658 aaKnown RBP16.82■□□□□ 0.28
USP48-213ENST00000529637 FER1L4A9Z1Z3 1794 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 DDX58O95786 925 aaKnown RBP16.82■□□□□ 0.28
USP48-213ENST00000529637 CSB-PGBD3P0DP91 1061 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 TYRO3Q06418 890 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 ZSCAN25Q6NSZ9 544 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 KIF18AQ8NI77 898 aa16.82■□□□□ 0.28
USP48-213ENST00000529637 PIP4K2AP48426 406 aaPredicted RBP16.81■□□□□ 0.28
USP48-213ENST00000529637 CBX8Q9HC52 389 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 ST3GAL1Q11201 340 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 COL9A3Q14050 684 aaPredicted RBP16.81■□□□□ 0.28
USP48-213ENST00000529637 ARHGEF25Q86VW2 580 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 CACTINQ8WUQ7 758 aaKnown RBP16.81■□□□□ 0.28
USP48-213ENST00000529637 RAPGEF4Q8WZA2 1011 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 AXIN2Q9Y2T1 843 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.81■□□□□ 0.28
USP48-213ENST00000529637 CACNA1FO60840 1977 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 PTH1RQ03431 593 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 CCDC144BQ3MJ40 725 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 ANO6Q4KMQ2 910 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 CCDC144CPQ8IYA2 1237 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 NECAB1Q8N987 351 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 KLHDC4Q8TBB5 520 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 ST7Q9NRC1 585 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 HDAC5Q9UQL6 1122 aa16.81■□□□□ 0.28
USP48-213ENST00000529637 ARID5BQ14865 1188 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 ADCK5Q3MIX3 580 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 TRIM5Q9C035 493 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 BOLA2Q9H3K6 86 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 BICC1Q9H694 974 aaKnown RBP16.8■□□□□ 0.28
USP48-213ENST00000529637 USP27XA6NNY8 438 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 GRM8O00222 908 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 ERC1Q8IUD2 1116 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 CCDC112Q8NEF3 446 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 SUCLG2Q96I99 432 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 HYPKQ9NX55 129 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 CCDC9Q9Y3X0 531 aaKnown RBP16.8■□□□□ 0.28
USP48-213ENST00000529637 ATP6V1DQ9Y5K8 247 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 LRRC37A3O60309 1634 aa16.8■□□□□ 0.28
USP48-213ENST00000529637 ALDH1L1O75891 902 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 MAPK8IP2Q13387 824 aaPredicted RBP16.79■□□□□ 0.28
USP48-213ENST00000529637 KRT28Q7Z3Y7 464 aa16.79■□□□□ 0.28
USP48-213ENST00000529637 PROSER2Q86WR7 435 aaPredicted RBP16.79■□□□□ 0.28
USP48-213ENST00000529637 MORC2Q9Y6X9 1032 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms