RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C8orf58Q8NAV2 365 aa26.62■■□□□ 1.85
VPS28-206ENST00000526734 RPGRQ92834 1020 aaKnown RBP26.62■■□□□ 1.85
VPS28-206ENST00000526734 TAOK3Q9H2K8 898 aa26.62■■□□□ 1.85
VPS28-206ENST00000526734 TNRC6CQ9HCJ0 1690 aaKnown RBP26.62■■□□□ 1.85
VPS28-206ENST00000526734 KDM2BQ8NHM5 1336 aa26.62■■□□□ 1.85
VPS28-206ENST00000526734 ELL2O00472 640 aaPredicted RBP26.61■■□□□ 1.85
VPS28-206ENST00000526734 HOXA10P31260 410 aaPredicted RBP26.61■■□□□ 1.85
VPS28-206ENST00000526734 GOLGA2Q08379 1002 aa26.61■■□□□ 1.85
VPS28-206ENST00000526734 SLC10A5Q5PT55 438 aa26.61■■□□□ 1.85
VPS28-206ENST00000526734 C7orf43Q8WVR3 580 aa26.61■■□□□ 1.85
VPS28-206ENST00000526734 ZNF219Q9P2Y4 722 aaPredicted RBP26.61■■□□□ 1.85
VPS28-206ENST00000526734 SLX4Q8IY92 1834 aa26.6■■□□□ 1.85
VPS28-206ENST00000526734 SBF1O95248 1867 aa26.6■■□□□ 1.85
VPS28-206ENST00000526734 FAM9BQ8IZU0 186 aa26.6■■□□□ 1.85
VPS28-206ENST00000526734 NLRP3Q96P20 1036 aa26.6■■□□□ 1.85
VPS28-206ENST00000526734 TSR2Q969E8 191 aaKnown RBP26.59■■□□□ 1.85
VPS28-206ENST00000526734 FER1L6Q2WGJ9 1857 aa26.59■■□□□ 1.85
VPS28-206ENST00000526734 SH3TC1Q8TE82 1336 aa26.59■■□□□ 1.85
VPS28-206ENST00000526734 CC2D2BQ6DHV5 1058 aa26.58■■□□□ 1.85
VPS28-206ENST00000526734 RTKN2Q8IZC4 609 aa26.58■■□□□ 1.85
VPS28-206ENST00000526734 RBM17Q96I25 401 aaKnown RBP26.58■■□□□ 1.85
VPS28-206ENST00000526734 CRAMP1Q96RY5 1269 aa26.58■■□□□ 1.85
VPS28-206ENST00000526734 DDX58O95786 925 aaKnown RBP26.57■■□□□ 1.84
VPS28-206ENST00000526734 TRIM28Q13263 835 aaKnown RBP26.57■■□□□ 1.84
VPS28-206ENST00000526734 GRIPAP1Q4V328 841 aa26.57■■□□□ 1.84
VPS28-206ENST00000526734 ISCA1Q9BUE6 129 aa26.57■■□□□ 1.84
VPS28-206ENST00000526734 TRMT112Q9UI30 125 aaKnown RBP26.57■■□□□ 1.84
VPS28-206ENST00000526734 KIF3CO14782 793 aa26.56■■□□□ 1.84
VPS28-206ENST00000526734 STK31Q9BXU1 1019 aa26.56■■□□□ 1.84
VPS28-206ENST00000526734 PRELPP51888 382 aa26.55■■□□□ 1.84
VPS28-206ENST00000526734 TWISTNBQ3B726 338 aaPredicted RBP26.55■■□□□ 1.84
VPS28-206ENST00000526734 RIC3Q7Z5B4 369 aa26.55■■□□□ 1.84
VPS28-206ENST00000526734 TSPYL6Q8N831 410 aa26.55■■□□□ 1.84
VPS28-206ENST00000526734 CACNA1SQ13698 1873 aa26.55■■□□□ 1.84
VPS28-206ENST00000526734 FKBP4Q02790 459 aaKnown RBP eCLIP26.54■■□□□ 1.84
VPS28-206ENST00000526734 FANCIQ9NVI1 1328 aa26.54■■□□□ 1.84
VPS28-206ENST00000526734 PHAXQ9H814 394 aaKnown RBP26.53■■□□□ 1.84
VPS28-206ENST00000526734 TIAM2Q8IVF5 1701 aa26.53■■□□□ 1.84
VPS28-206ENST00000526734 SENP3-EIF4A1A0A087X0R7 540 aa26.52■■□□□ 1.84
VPS28-206ENST00000526734 GLTPD2A6NH11 291 aa26.52■■□□□ 1.84
VPS28-206ENST00000526734 HSP90B1P14625 803 aaKnown RBP26.51■■□□□ 1.83
VPS28-206ENST00000526734 MYH16Q9H6N6 1097 aa26.51■■□□□ 1.83
VPS28-206ENST00000526734 NMRK2Q9NPI5 230 aa26.51■■□□□ 1.83
VPS28-206ENST00000526734 SALL2Q9Y467 1007 aaPredicted RBP26.51■■□□□ 1.83
VPS28-206ENST00000526734 DPY19L2Q6NUT2 758 aa26.5■■□□□ 1.83
VPS28-206ENST00000526734 PSMD1Q99460 953 aa26.5■■□□□ 1.83
VPS28-206ENST00000526734 TMX4Q9H1E5 349 aaPredicted RBP26.5■■□□□ 1.83
VPS28-206ENST00000526734 ATP5J2-PTCD1G3V325 749 aa26.49■■□□□ 1.83
VPS28-206ENST00000526734 PPEF1O14829 653 aaPredicted RBP26.49■■□□□ 1.83
VPS28-206ENST00000526734 TOMM70O94826 608 aa26.49■■□□□ 1.83
VPS28-206ENST00000526734 C3orf67Q6ZVT6 689 aa26.49■■□□□ 1.83
VPS28-206ENST00000526734 SNED1Q8TER0 1413 aa26.48■■□□□ 1.83
VPS28-206ENST00000526734 CCDC191Q8NCU4 936 aa26.48■■□□□ 1.83
VPS28-206ENST00000526734 DICER1Q9UPY3 1922 aaKnown RBP26.47■■□□□ 1.83
VPS28-206ENST00000526734 HCLS1P14317 486 aaPredicted RBP26.47■■□□□ 1.83
VPS28-206ENST00000526734 C16orf71Q8IYS4 520 aaPredicted RBP26.47■■□□□ 1.83
VPS28-206ENST00000526734 METTL22Q9BUU2 404 aaPredicted RBP26.47■■□□□ 1.83
VPS28-206ENST00000526734 CCER2I3L3R5 266 aa26.46■■□□□ 1.83
VPS28-206ENST00000526734 BBOX1O75936 387 aa26.46■■□□□ 1.83
VPS28-206ENST00000526734 KSR2Q6VAB6 950 aa26.46■■□□□ 1.83
VPS28-206ENST00000526734 DDX46Q7L014 1031 aaKnown RBP26.46■■□□□ 1.83
VPS28-206ENST00000526734 ABCC4O15439 1325 aa26.45■■□□□ 1.83
VPS28-206ENST00000526734 TMC4Q7Z404 712 aa26.45■■□□□ 1.82
VPS28-206ENST00000526734 ZBTB38Q8NAP3 1195 aaPredicted RBP26.45■■□□□ 1.82
VPS28-206ENST00000526734 FAM89AQ96GI7 184 aa26.45■■□□□ 1.82
VPS28-206ENST00000526734 MYD88Q99836 296 aa26.45■■□□□ 1.82
VPS28-206ENST00000526734 CCDC88AQ3V6T2 1871 aa26.45■■□□□ 1.82
VPS28-206ENST00000526734 SYNE4Q8N205 404 aa26.44■■□□□ 1.82
VPS28-206ENST00000526734 RBM46Q8TBY0 533 aaKnown RBP26.44■■□□□ 1.82
VPS28-206ENST00000526734 ATP6V0A2Q9Y487 856 aa26.44■■□□□ 1.82
VPS28-206ENST00000526734 SLC4A2P04920 1241 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 VEGFAP15692 232 aaPredicted RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 IARSP41252 1262 aaKnown RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 NEXNQ0ZGT2 675 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 GRAPQ13588 217 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 SF3B3Q15393 1217 aaKnown RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 OLFM4Q6UX06 510 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 GRAPLQ8TC17 118 aaPredicted RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 RRAGCQ9HB90 399 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 ZNF277Q9NRM2 450 aaPredicted RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 CWC25Q9NXE8 425 aaPredicted RBP26.43■■□□□ 1.82
VPS28-206ENST00000526734 MAP3K2Q9Y2U5 619 aa26.43■■□□□ 1.82
VPS28-206ENST00000526734 ZNF521Q96K83 1311 aa26.42■■□□□ 1.82
VPS28-206ENST00000526734 IRS4O14654 1257 aaPredicted RBP26.42■■□□□ 1.82
VPS28-206ENST00000526734 VAMP4O75379 141 aa26.42■■□□□ 1.82
VPS28-206ENST00000526734 PCCAP05165 728 aaPredicted RBP26.42■■□□□ 1.82
VPS28-206ENST00000526734 EXOSC9Q06265 439 aaKnown RBP26.42■■□□□ 1.82
VPS28-206ENST00000526734 LAMB2P55268 1798 aa26.41■■□□□ 1.82
VPS28-206ENST00000526734 PI4KAP2A4QPH2 592 aa26.41■■□□□ 1.82
VPS28-206ENST00000526734 PI4KAP1Q8N8J0 262 aa26.41■■□□□ 1.82
VPS28-206ENST00000526734 VPS33BQ9H267 617 aa26.41■■□□□ 1.82
VPS28-206ENST00000526734 SP8Q8IXZ3 490 aa26.4■■□□□ 1.82
VPS28-206ENST00000526734 DDX60Q8IY21 1712 aaKnown RBP26.39■■□□□ 1.82
VPS28-206ENST00000526734 WDR90Q96KV7 1748 aa26.39■■□□□ 1.82
VPS28-206ENST00000526734 FLIIQ13045 1269 aa26.39■■□□□ 1.82
VPS28-206ENST00000526734 SUPT20HQ8NEM7 779 aa26.39■■□□□ 1.82
VPS28-206ENST00000526734 JDP2Q8WYK2 163 aa26.39■■□□□ 1.82
VPS28-206ENST00000526734 SPINK5Q9NQ38 1064 aaPredicted RBP26.39■■□□□ 1.82
VPS28-206ENST00000526734 TCERG1O14776 1098 aaKnown RBP26.38■■□□□ 1.81
VPS28-206ENST00000526734 HSPA6P17066 643 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms