RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CTBSQ01459 385 aa8.06□□□□□ -1.12
CD44-215ENST00000525241 KRT76Q01546 638 aa8.06□□□□□ -1.12
CD44-215ENST00000525241 LAMC2Q13753 1193 aa8.06□□□□□ -1.12
CD44-215ENST00000525241 H3BRB1 525 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 FAM13AO94988 1023 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 CD33P20138 364 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 GMPRP36959 345 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 ZAP70P43403 619 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 EIF1AXP47813 144 aaKnown RBP8.05□□□□□ -1.12
CD44-215ENST00000525241 ARSDP51689 593 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 NOM1Q5C9Z4 860 aaKnown RBP8.05□□□□□ -1.12
CD44-215ENST00000525241 TUT1Q9H6E5 874 aaKnown RBP8.05□□□□□ -1.12
CD44-215ENST00000525241 MARK1Q9P0L2 795 aa8.05□□□□□ -1.12
CD44-215ENST00000525241 C2CD2LO14523 706 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 GRIN2CQ14957 1233 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 FAM182BQ5T319 152 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 ATCAYQ86WG3 371 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 GLYCTKQ8IVS8 523 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 KCNH4Q9UQ05 1017 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 USP20Q9Y2K6 914 aa8.04□□□□□ -1.12
CD44-215ENST00000525241 MX2P20592 715 aa8.03□□□□□ -1.12
CD44-215ENST00000525241 ARHGAP4P98171 946 aa8.03□□□□□ -1.12
CD44-215ENST00000525241 MBIPQ9NS73 344 aa8.03□□□□□ -1.12
CD44-215ENST00000525241 RTCBQ9Y3I0 505 aaKnown RBP8.03□□□□□ -1.12
CD44-215ENST00000525241 ALKBH2Q6NS38 261 aa8.02□□□□□ -1.13
CD44-215ENST00000525241 RGL4Q8IZJ4 473 aa8.02□□□□□ -1.13
CD44-215ENST00000525241 GPR152Q8TDT2 470 aa8.02□□□□□ -1.13
CD44-215ENST00000525241 CNTNAP3BQ96NU0 1288 aa8.02□□□□□ -1.13
CD44-215ENST00000525241 CNTNAP3Q9BZ76 1288 aa8.02□□□□□ -1.13
CD44-215ENST00000525241 FZD6O60353 706 aa8.01□□□□□ -1.13
CD44-215ENST00000525241 EPB42P16452 691 aa8.01□□□□□ -1.13
CD44-215ENST00000525241 SLC30A3Q99726 388 aa8.01□□□□□ -1.13
CD44-215ENST00000525241 KCNMB2Q9Y691 235 aa8.01□□□□□ -1.13
CD44-215ENST00000525241 IGF1RP08069 1367 aa8□□□□□ -1.13
CD44-215ENST00000525241 BMP4P12644 408 aa8□□□□□ -1.13
CD44-215ENST00000525241 SPEM2Q0P670 501 aa8□□□□□ -1.13
CD44-215ENST00000525241 CMTR1Q8N1G2 835 aaKnown RBP8□□□□□ -1.13
CD44-215ENST00000525241 PIK3R5Q8WYR1 880 aa8□□□□□ -1.13
CD44-215ENST00000525241 GSX2Q9BZM3 304 aa8□□□□□ -1.13
CD44-215ENST00000525241 C11orf16Q9NQ32 467 aa8□□□□□ -1.13
CD44-215ENST00000525241 FAM13BQ9NYF5 915 aa8□□□□□ -1.13
CD44-215ENST00000525241 SRSF11Q05519 484 aaKnown RBP7.99□□□□□ -1.13
CD44-215ENST00000525241 TRIP4Q15650 581 aaPredicted RBP7.99□□□□□ -1.13
CD44-215ENST00000525241 EDEM1Q92611 657 aa7.99□□□□□ -1.13
CD44-215ENST00000525241 CCDC87Q9NVE4 849 aa7.99□□□□□ -1.13
CD44-215ENST00000525241 EGFRP00533 1210 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 PDGFAP04085 211 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 MZF1P28698 734 aaPredicted RBP7.98□□□□□ -1.13
CD44-215ENST00000525241 MAP2K3P46734 347 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 DNM1Q05193 864 aaKnown RBP7.98□□□□□ -1.13
CD44-215ENST00000525241 AAMPQ13685 434 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 CCINQ13939 588 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 NUDT16Q96DE0 195 aaKnown RBP7.98□□□□□ -1.13
CD44-215ENST00000525241 POLIQ9UNA4 740 aa7.98□□□□□ -1.13
CD44-215ENST00000525241 NSFL1CQ9UNZ2 370 aaKnown RBP7.98□□□□□ -1.13
CD44-215ENST00000525241 WIPF1O43516 503 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 XYLBO75191 536 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 ADAMTS2O95450 1211 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 SLURP2P0DP57 97 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 ZNF468Q5VIY5 522 aaPredicted RBP7.97□□□□□ -1.13
CD44-215ENST00000525241 GGNBP2Q9H3C7 697 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 BIN2Q9UBW5 565 aaPredicted RBP7.97□□□□□ -1.13
CD44-215ENST00000525241 KLF15Q9UIH9 416 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 PRR12Q9ULL5 1215 aa7.97□□□□□ -1.13
CD44-215ENST00000525241 SND1Q7KZF4 910 aaKnown RBP eCLIP7.96□□□□□ -1.14
CD44-215ENST00000525241 RAB44Q7Z6P3 723 aaPredicted RBP7.96□□□□□ -1.14
CD44-215ENST00000525241 GZF1Q9H116 711 aaPredicted RBP7.96□□□□□ -1.14
CD44-215ENST00000525241 ZBTB7CA1YPR0 619 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 UBAP1LF5GYI3 381 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 SASH3O75995 380 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 ARAFP10398 606 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 TARSP26639 723 aaKnown RBP7.95□□□□□ -1.14
CD44-215ENST00000525241 TRIM26Q12899 539 aaPredicted RBP7.95□□□□□ -1.14
CD44-215ENST00000525241 SYT9Q86SS6 491 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 ACDQ96AP0 544 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 EFCC1Q9HA90 598 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 AVENQ9NQS1 362 aaPredicted RBP7.95□□□□□ -1.14
CD44-215ENST00000525241 BRPF3Q9ULD4 1205 aa7.95□□□□□ -1.14
CD44-215ENST00000525241 RPLP1P05386 114 aaKnown RBP7.94□□□□□ -1.14
CD44-215ENST00000525241 PCSK2P16519 638 aa7.94□□□□□ -1.14
CD44-215ENST00000525241 PCBP4P57723 403 aaKnown RBP7.94□□□□□ -1.14
CD44-215ENST00000525241 KRT25Q7Z3Z0 450 aa7.94□□□□□ -1.14
CD44-215ENST00000525241 GJD3Q8N144 294 aa7.94□□□□□ -1.14
CD44-215ENST00000525241 BHMTQ93088 406 aa7.94□□□□□ -1.14
CD44-215ENST00000525241 OXCT2Q9BYC2 517 aaPredicted RBP7.94□□□□□ -1.14
CD44-215ENST00000525241 ZFATQ9P243 1243 aa7.94□□□□□ -1.14
CD44-215ENST00000525241 FNDC3AQ9Y2H6 1198 aaKnown RBP7.94□□□□□ -1.14
CD44-215ENST00000525241 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.94□□□□□ -1.14
CD44-215ENST00000525241 NDUFB5O43674 189 aa7.93□□□□□ -1.14
CD44-215ENST00000525241 NFKB1P19838 968 aa7.93□□□□□ -1.14
CD44-215ENST00000525241 USP5P45974 858 aa7.93□□□□□ -1.14
CD44-215ENST00000525241 XKR5Q6UX68 686 aa7.93□□□□□ -1.14
CD44-215ENST00000525241 GGA1Q9UJY5 639 aa7.93□□□□□ -1.14
CD44-215ENST00000525241 A6NHS1 94 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 NEURL1BA8MQ27 555 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 SIN3BO75182 1162 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 MAP3K6O95382 1288 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 LORP23490 312 aaPredicted RBP7.92□□□□□ -1.14
CD44-215ENST00000525241 ADH6P28332 368 aa7.92□□□□□ -1.14
CD44-215ENST00000525241 NEUROD1Q13562 356 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms