RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MVPQ14764 893 aaKnown RBP20.55■□□□□ 0.88
LSM1-204ENST00000522515 SUSD4Q5VX71 490 aa20.55■□□□□ 0.88
LSM1-204ENST00000522515 FAM177BA6PVY3 158 aa20.55■□□□□ 0.88
LSM1-204ENST00000522515 PARP10Q53GL7 1025 aa20.55■□□□□ 0.88
LSM1-204ENST00000522515 COL24A1Q17RW2 1714 aa20.54■□□□□ 0.88
LSM1-204ENST00000522515 ZBTB7AO95365 584 aa20.54■□□□□ 0.88
LSM1-204ENST00000522515 DDR1Q08345 913 aa20.54■□□□□ 0.88
LSM1-204ENST00000522515 CARMIL3Q8ND23 1372 aa20.53■□□□□ 0.88
LSM1-204ENST00000522515 CRBNQ96SW2 442 aa20.53■□□□□ 0.88
LSM1-204ENST00000522515 USP44Q9H0E7 712 aa20.53■□□□□ 0.88
LSM1-204ENST00000522515 IBTKQ9P2D0 1353 aaPredicted RBP20.52■□□□□ 0.88
LSM1-204ENST00000522515 POLRMTO00411 1230 aaKnown RBP20.52■□□□□ 0.88
LSM1-204ENST00000522515 MMP10P09238 476 aa20.52■□□□□ 0.88
LSM1-204ENST00000522515 JARID2Q92833 1246 aaPredicted RBP20.52■□□□□ 0.88
LSM1-204ENST00000522515 MEIS3Q99687 375 aa20.52■□□□□ 0.88
LSM1-204ENST00000522515 TRMT112Q9UI30 125 aaKnown RBP20.52■□□□□ 0.88
LSM1-204ENST00000522515 GRM8O00222 908 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 NTSR2O95665 410 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 NBPF7P0C2Y1 421 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 RTL5Q5HYW3 569 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 PPP1R42Q7Z4L9 355 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 UTP14AQ9BVJ6 771 aaKnown RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 MTFR1LQ9H019 292 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 C9orf78Q9NZ63 289 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 DDX19BQ9UMR2 479 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 H7C1W4 665 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 ZBTB7BO15156 539 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 NBPF5PQ86XG9 351 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 SYNE4Q8N205 404 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 FAM89AQ96GI7 184 aa20.51■□□□□ 0.87
LSM1-204ENST00000522515 ATF5Q9Y2D1 282 aaPredicted RBP20.51■□□□□ 0.87
LSM1-204ENST00000522515 SERPINB2P05120 415 aa20.5■□□□□ 0.87
LSM1-204ENST00000522515 PCCAP05165 728 aaPredicted RBP20.5■□□□□ 0.87
LSM1-204ENST00000522515 UBE3BQ7Z3V4 1068 aa20.5■□□□□ 0.87
LSM1-204ENST00000522515 NUTM1Q86Y26 1132 aa20.5■□□□□ 0.87
LSM1-204ENST00000522515 ZBTB38Q8NAP3 1195 aaPredicted RBP20.5■□□□□ 0.87
LSM1-204ENST00000522515 UTYO14607 1347 aa20.49■□□□□ 0.87
LSM1-204ENST00000522515 CASP7P55210 303 aa20.49■□□□□ 0.87
LSM1-204ENST00000522515 PARP3Q9Y6F1 533 aa20.49■□□□□ 0.87
LSM1-204ENST00000522515 TPTE2Q6XPS3 522 aa20.48■□□□□ 0.87
LSM1-204ENST00000522515 EXOC6Q8TAG9 804 aa20.48■□□□□ 0.87
LSM1-204ENST00000522515 NYXQ9GZU5 481 aa20.48■□□□□ 0.87
LSM1-204ENST00000522515 ERFEQ4G0M1 354 aa20.47■□□□□ 0.87
LSM1-204ENST00000522515 CCDC24Q8N4L8 307 aa20.47■□□□□ 0.87
LSM1-204ENST00000522515 SH3TC1Q8TE82 1336 aa20.47■□□□□ 0.87
LSM1-204ENST00000522515 GNAI3P08754 354 aa20.46■□□□□ 0.87
LSM1-204ENST00000522515 UBTFL1P0CB47 393 aaPredicted RBP20.46■□□□□ 0.87
LSM1-204ENST00000522515 GTF2E1P29083 439 aaPredicted RBP20.46■□□□□ 0.87
LSM1-204ENST00000522515 PRR5LQ6MZQ0 368 aa20.46■□□□□ 0.87
LSM1-204ENST00000522515 CNBD1Q8NA66 436 aa20.46■□□□□ 0.87
LSM1-204ENST00000522515 NRXN2Q9P2S2 1712 aa20.46■□□□□ 0.87
LSM1-204ENST00000522515 ZBTB40Q9NUA8 1239 aa20.46■□□□□ 0.87
LSM1-204ENST00000522515 NPHP1O15259 732 aa20.45■□□□□ 0.86
LSM1-204ENST00000522515 NEFLP07196 543 aa20.45■□□□□ 0.86
LSM1-204ENST00000522515 SUCLG2Q96I99 432 aa20.45■□□□□ 0.86
LSM1-204ENST00000522515 CDHR2Q9BYE9 1310 aa20.45■□□□□ 0.86
LSM1-204ENST00000522515 ABCC12Q96J65 1359 aa20.45■□□□□ 0.86
LSM1-204ENST00000522515 IRS4O14654 1257 aaPredicted RBP20.44■□□□□ 0.86
LSM1-204ENST00000522515 HCLS1P14317 486 aaPredicted RBP20.44■□□□□ 0.86
LSM1-204ENST00000522515 KAZALD1Q96I82 304 aa20.44■□□□□ 0.86
LSM1-204ENST00000522515 SGIP1Q9BQI5 828 aa20.44■□□□□ 0.86
LSM1-204ENST00000522515 PTGER2P43116 358 aa20.43■□□□□ 0.86
LSM1-204ENST00000522515 CHMP4BQ9H444 224 aaKnown RBP20.43■□□□□ 0.86
LSM1-204ENST00000522515 C1orf115Q9H7X2 142 aa20.43■□□□□ 0.86
LSM1-204ENST00000522515 LRRFIP2Q9Y608 721 aaKnown RBP20.43■□□□□ 0.86
LSM1-204ENST00000522515 DDX60Q8IY21 1712 aaKnown RBP20.43■□□□□ 0.86
LSM1-204ENST00000522515 POLD1P28340 1107 aa20.42■□□□□ 0.86
LSM1-204ENST00000522515 SLC10A5Q5PT55 438 aa20.42■□□□□ 0.86
LSM1-204ENST00000522515 GNAI2P04899 355 aa20.42■□□□□ 0.86
LSM1-204ENST00000522515 ST5P78524 1137 aa20.42■□□□□ 0.86
LSM1-204ENST00000522515 EPHA10Q5JZY3 1008 aa20.42■□□□□ 0.86
LSM1-204ENST00000522515 FOXO4P98177 505 aa20.41■□□□□ 0.86
LSM1-204ENST00000522515 PLA2G12BQ9BX93 195 aa20.41■□□□□ 0.86
LSM1-204ENST00000522515 SPON1Q9HCB6 807 aa20.41■□□□□ 0.86
LSM1-204ENST00000522515 LAMB2P55268 1798 aa20.4■□□□□ 0.86
LSM1-204ENST00000522515 PDE8AO60658 829 aa20.4■□□□□ 0.86
LSM1-204ENST00000522515 BICC1Q9H694 974 aaKnown RBP20.4■□□□□ 0.86
LSM1-204ENST00000522515 TNRC6CQ9HCJ0 1690 aaKnown RBP20.4■□□□□ 0.86
LSM1-204ENST00000522515 C3orf67Q6ZVT6 689 aa20.39■□□□□ 0.85
LSM1-204ENST00000522515 HDAC5Q9UQL6 1122 aa20.39■□□□□ 0.85
LSM1-204ENST00000522515 HSP90B1P14625 803 aaKnown RBP20.38■□□□□ 0.85
LSM1-204ENST00000522515 ANKRD44Q8N8A2 993 aa20.38■□□□□ 0.85
LSM1-204ENST00000522515 RIC1Q4ADV7 1423 aa20.38■□□□□ 0.85
LSM1-204ENST00000522515 ANKRD31Q8N7Z5 1873 aa20.38■□□□□ 0.85
LSM1-204ENST00000522515 CTSWP56202 376 aa20.38■□□□□ 0.85
LSM1-204ENST00000522515 RABL6Q3YEC7 729 aaPredicted RBP20.37■□□□□ 0.85
LSM1-204ENST00000522515 LMBR1LQ6UX01 489 aa20.37■□□□□ 0.85
LSM1-204ENST00000522515 TTLL11Q8NHH1 800 aa20.37■□□□□ 0.85
LSM1-204ENST00000522515 NLRP3Q96P20 1036 aa20.37■□□□□ 0.85
LSM1-204ENST00000522515 BRIP1Q9BX63 1249 aa20.37■□□□□ 0.85
LSM1-204ENST00000522515 MYH3P11055 1940 aa20.36■□□□□ 0.85
LSM1-204ENST00000522515 C10orf71Q711Q0 1435 aa20.36■□□□□ 0.85
LSM1-204ENST00000522515 CSF1RP07333 972 aa20.36■□□□□ 0.85
LSM1-204ENST00000522515 AAMPQ13685 434 aa20.36■□□□□ 0.85
LSM1-204ENST00000522515 CCDC85AQ96PX6 553 aaPredicted RBP20.36■□□□□ 0.85
LSM1-204ENST00000522515 CEP85Q6P2H3 762 aa20.35■□□□□ 0.85
LSM1-204ENST00000522515 PCDHB15Q9Y5E8 787 aa20.35■□□□□ 0.85
LSM1-204ENST00000522515 KLRG2A4D1S0 409 aaPredicted RBP20.34■□□□□ 0.85
LSM1-204ENST00000522515 SF3B3Q15393 1217 aaKnown RBP20.34■□□□□ 0.85
LSM1-204ENST00000522515 MTX1Q13505 466 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms