RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 SNED1Q8TER0 1413 aa12.15□□□□□ -0.46
CLK4-209ENST00000521621 A0A0G2JLW4 131 aa12.15□□□□□ -0.46
CLK4-209ENST00000521621 GPR162Q16538 588 aa12.15□□□□□ -0.46
CLK4-209ENST00000521621 DICER1Q9UPY3 1922 aaKnown RBP12.15□□□□□ -0.47
CLK4-209ENST00000521621 CDHR2Q9BYE9 1310 aa12.15□□□□□ -0.47
CLK4-209ENST00000521621 TTLL6Q8N841 843 aa12.14□□□□□ -0.47
CLK4-209ENST00000521621 CRAMP1Q96RY5 1269 aa12.14□□□□□ -0.47
CLK4-209ENST00000521621 BICDL1Q6ZP65 573 aa12.14□□□□□ -0.47
CLK4-209ENST00000521621 SBF1O95248 1867 aa12.14□□□□□ -0.47
CLK4-209ENST00000521621 ABCC12Q96J65 1359 aa12.14□□□□□ -0.47
CLK4-209ENST00000521621 ALDH1B1P30837 517 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 CC2D2BQ6DHV5 1058 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 C7orf43Q8WVR3 580 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 PHAXQ9H814 394 aaKnown RBP12.13□□□□□ -0.47
CLK4-209ENST00000521621 RTL9Q8NET4 1388 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 ANXA1P04083 346 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 TMC4Q7Z404 712 aa12.13□□□□□ -0.47
CLK4-209ENST00000521621 PTPRCP08575 1304 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 ZBED9Q6R2W3 1325 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 SH3TC1Q8TE82 1336 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 PCCAP05165 728 aaPredicted RBP12.12□□□□□ -0.47
CLK4-209ENST00000521621 SF3B3Q15393 1217 aaKnown RBP12.12□□□□□ -0.47
CLK4-209ENST00000521621 ERFEQ4G0M1 354 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 KLHL34Q8N239 644 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 ZBTB38Q8NAP3 1195 aaPredicted RBP12.12□□□□□ -0.47
CLK4-209ENST00000521621 SLX4Q8IY92 1834 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 SLC4A2P04920 1241 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 FLIIQ13045 1269 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 RIC3Q7Z5B4 369 aa12.12□□□□□ -0.47
CLK4-209ENST00000521621 MYH3P11055 1940 aa12.11□□□□□ -0.47
CLK4-209ENST00000521621 CHRNA5P30532 468 aa12.11□□□□□ -0.47
CLK4-209ENST00000521621 NECTIN2Q92692 538 aa12.11□□□□□ -0.47
CLK4-209ENST00000521621 AIMP1Q12904 312 aaKnown RBP12.11□□□□□ -0.47
CLK4-209ENST00000521621 PLA2G12BQ9BX93 195 aa12.11□□□□□ -0.47
CLK4-209ENST00000521621 VPS33BQ9H267 617 aa12.11□□□□□ -0.47
CLK4-209ENST00000521621 LTBP1Q14766 1721 aa12.1□□□□□ -0.47
CLK4-209ENST00000521621 ELL2O00472 640 aaPredicted RBP12.1□□□□□ -0.47
CLK4-209ENST00000521621 MRPL50Q8N5N7 158 aaKnown RBP12.1□□□□□ -0.47
CLK4-209ENST00000521621 CACNA1SQ13698 1873 aa12.1□□□□□ -0.47
CLK4-209ENST00000521621 TIAM2Q8IVF5 1701 aa12.1□□□□□ -0.47
CLK4-209ENST00000521621 RBM17Q96I25 401 aaKnown RBP12.1□□□□□ -0.47
CLK4-209ENST00000521621 NLRP3Q96P20 1036 aa12.1□□□□□ -0.47
CLK4-209ENST00000521621 CWC25Q9NXE8 425 aaPredicted RBP12.1□□□□□ -0.47
CLK4-209ENST00000521621 NEXNQ0ZGT2 675 aa12.09□□□□□ -0.47
CLK4-209ENST00000521621 LINS1Q8NG48 757 aa12.09□□□□□ -0.47
CLK4-209ENST00000521621 MAP3K2Q9Y2U5 619 aa12.09□□□□□ -0.47
CLK4-209ENST00000521621 GPTP24298 496 aa12.09□□□□□ -0.47
CLK4-209ENST00000521621 H7C1W4 665 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 ALDH1L1O75891 902 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 DNAAF4Q8WXU2 420 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 ARHGAP45Q92619 1136 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 TRMT112Q9UI30 125 aaKnown RBP12.08□□□□□ -0.48
CLK4-209ENST00000521621 BCS1LQ9Y276 419 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 PI4KAP2A4QPH2 592 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 BBOX1O75936 387 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 IGKV5-2P06315 115 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 GTF2E1P29083 439 aaPredicted RBP12.08□□□□□ -0.48
CLK4-209ENST00000521621 G2E3Q7L622 706 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 PI4KAP1Q8N8J0 262 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 UTYO14607 1347 aa12.08□□□□□ -0.48
CLK4-209ENST00000521621 NEURL1BA8MQ27 555 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 PRPF40BQ6NWY9 871 aaKnown RBP12.07□□□□□ -0.48
CLK4-209ENST00000521621 RTKN2Q8IZC4 609 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 PSMD1Q99460 953 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 NPHP1O15259 732 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 MYD88Q99836 296 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 SALL2Q9Y467 1007 aaPredicted RBP12.07□□□□□ -0.48
CLK4-209ENST00000521621 CASP7P55210 303 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 BEND3Q5T5X7 828 aa12.07□□□□□ -0.48
CLK4-209ENST00000521621 CCDC93Q567U6 631 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 NUTM1Q86Y26 1132 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 RPGRQ92834 1020 aaKnown RBP12.06□□□□□ -0.48
CLK4-209ENST00000521621 RTFDC1Q9BY42 306 aaPredicted RBP12.06□□□□□ -0.48
CLK4-209ENST00000521621 PDE8AO60658 829 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 GCKRQ14397 625 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 SP8Q8IXZ3 490 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 CDCA7LQ96GN5 454 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 WDR90Q96KV7 1748 aa12.06□□□□□ -0.48
CLK4-209ENST00000521621 YY1P25490 414 aa12.05□□□□□ -0.48
CLK4-209ENST00000521621 GRAPQ13588 217 aa12.05□□□□□ -0.48
CLK4-209ENST00000521621 GRAPLQ8TC17 118 aaPredicted RBP12.05□□□□□ -0.48
CLK4-209ENST00000521621 LMNB1P20700 586 aa12.05□□□□□ -0.48
CLK4-209ENST00000521621 FKBP4Q02790 459 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLK4-209ENST00000521621 FKBP5Q13451 457 aaPredicted RBP12.05□□□□□ -0.48
CLK4-209ENST00000521621 SSH1Q8WYL5 1049 aa12.05□□□□□ -0.48
CLK4-209ENST00000521621 ZNF622Q969S3 477 aaKnown RBP eCLIP12.05□□□□□ -0.484e-6■□□□□ 8.1
CLK4-209ENST00000521621 ATP6V0A2Q9Y487 856 aa12.05□□□□□ -0.48
CLK4-209ENST00000521621 NFKBIEO00221 500 aa12.04□□□□□ -0.48
CLK4-209ENST00000521621 IRS4O14654 1257 aaPredicted RBP12.04□□□□□ -0.48
CLK4-209ENST00000521621 ABCC4O15439 1325 aa12.04□□□□□ -0.48
CLK4-209ENST00000521621 KIF16BQ96L93 1317 aa12.04□□□□□ -0.48
CLK4-209ENST00000521621 C3orf67Q6ZVT6 689 aa12.04□□□□□ -0.48
CLK4-209ENST00000521621 ATP5J2-PTCD1G3V325 749 aa12.03□□□□□ -0.48
CLK4-209ENST00000521621 CSF1RP07333 972 aa12.03□□□□□ -0.48
CLK4-209ENST00000521621 RARSP54136 660 aaKnown RBP12.03□□□□□ -0.48
CLK4-209ENST00000521621 ARHGAP27Q6ZUM4 889 aa12.03□□□□□ -0.48
CLK4-209ENST00000521621 PELP1Q8IZL8 1130 aaKnown RBP12.03□□□□□ -0.48
CLK4-209ENST00000521621 PPEF1O14829 653 aaPredicted RBP12.03□□□□□ -0.48
CLK4-209ENST00000521621 CCDC88AQ3V6T2 1871 aa12.03□□□□□ -0.48
CLK4-209ENST00000521621 DDX46Q7L014 1031 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms