RNA–Protein interactions for RNA: ENST00000518140.5

SLIT3-204, Transcript of slit guidance ligand 3, humanhuman

TSL 1 (best)

Gene SLIT3, Length 2,090 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIT3-204ENST00000518140 RFX5P48382 616 aaPredicted RBP28.78■■■□□ 2.2
SLIT3-204ENST00000518140 EIF5P55010 431 aaKnown RBP28.78■■■□□ 2.2
SLIT3-204ENST00000518140 TRIM28Q13263 835 aaKnown RBP28.78■■■□□ 2.2
SLIT3-204ENST00000518140 GPTP24298 496 aa28.78■■■□□ 2.2
SLIT3-204ENST00000518140 LMBR1LQ6UX01 489 aa28.78■■■□□ 2.2
SLIT3-204ENST00000518140 DZIP3Q86Y13 1208 aaKnown RBP28.78■■■□□ 2.2
SLIT3-204ENST00000518140 STAP2Q9UGK3 403 aa28.78■■■□□ 2.2
SLIT3-204ENST00000518140 SASH1O94885 1247 aa28.77■■■□□ 2.2
SLIT3-204ENST00000518140 CDC45O75419 566 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 PTPN12Q05209 780 aaKnown RBP28.74■■■□□ 2.19
SLIT3-204ENST00000518140 G3BP1Q13283 466 aaKnown RBP eCLIP28.74■■■□□ 2.19
SLIT3-204ENST00000518140 SYNE4Q8N205 404 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 FAM89AQ96GI7 184 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 TBC1D32Q96NH3 1257 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 NBR1Q14596 966 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 LINC00116Q8NCU8 138 aa28.74■■■□□ 2.19
SLIT3-204ENST00000518140 DEKP35659 375 aaKnown RBP28.73■■■□□ 2.19
SLIT3-204ENST00000518140 UPF2Q9HAU5 1272 aaKnown RBP28.73■■■□□ 2.19
SLIT3-204ENST00000518140 MYH14Q7Z406 1995 aaKnown RBP28.73■■■□□ 2.19
SLIT3-204ENST00000518140 NLRP10Q86W26 655 aa28.73■■■□□ 2.19
SLIT3-204ENST00000518140 COPRSQ9NQ92 184 aa28.72■■■□□ 2.19
SLIT3-204ENST00000518140 CHMP3Q9Y3E7 222 aa28.72■■■□□ 2.19
SLIT3-204ENST00000518140 ERVV-1B6SEH8 477 aa28.71■■■□□ 2.19
SLIT3-204ENST00000518140 ERC1Q8IUD2 1116 aa28.71■■■□□ 2.19
SLIT3-204ENST00000518140 PCCAP05165 728 aaPredicted RBP28.7■■■□□ 2.18
SLIT3-204ENST00000518140 CLASRPQ8N2M8 674 aaKnown RBP28.7■■■□□ 2.18
SLIT3-204ENST00000518140 ZBTB38Q8NAP3 1195 aaPredicted RBP28.69■■■□□ 2.18
SLIT3-204ENST00000518140 PI4K2BQ8TCG2 481 aa28.69■■■□□ 2.18
SLIT3-204ENST00000518140 C22orf23Q9BZE7 217 aa28.69■■■□□ 2.18
SLIT3-204ENST00000518140 HSP90AB3PQ58FF7 597 aa28.68■■■□□ 2.18
SLIT3-204ENST00000518140 SMIM5Q71RC9 77 aa28.68■■■□□ 2.18
SLIT3-204ENST00000518140 EAF2Q96CJ1 260 aaPredicted RBP28.68■■■□□ 2.18
SLIT3-204ENST00000518140 UBN2Q6ZU65 1347 aa28.67■■■□□ 2.18
SLIT3-204ENST00000518140 CAMTA2O94983 1202 aa28.66■■■□□ 2.18
SLIT3-204ENST00000518140 AACSQ86V21 672 aa28.66■■■□□ 2.18
SLIT3-204ENST00000518140 ZNF34Q8IZ26 560 aa28.66■■■□□ 2.18
SLIT3-204ENST00000518140 BTAF1O14981 1849 aa28.65■■■□□ 2.18
SLIT3-204ENST00000518140 AOX1Q06278 1338 aa28.65■■■□□ 2.18
SLIT3-204ENST00000518140 MAP4K4O95819 1239 aaPredicted RBP28.65■■■□□ 2.18
SLIT3-204ENST00000518140 CICQ96RK0 1608 aaPredicted RBP28.65■■■□□ 2.18
SLIT3-204ENST00000518140 RREB1Q92766 1687 aa28.65■■■□□ 2.18
SLIT3-204ENST00000518140 ZNF594Q96JF6 807 aaPredicted RBP28.65■■■□□ 2.18
SLIT3-204ENST00000518140 CCDC8Q9H0W5 538 aaPredicted RBP28.65■■■□□ 2.18
SLIT3-204ENST00000518140 NUP98P52948 1817 aa28.64■■■□□ 2.18
SLIT3-204ENST00000518140 TRIM6-TRIM34B2RNG4 842 aa28.64■■■□□ 2.18
SLIT3-204ENST00000518140 SLC4A3P48751 1232 aa28.64■■■□□ 2.18
SLIT3-204ENST00000518140 RILPL2Q969X0 211 aa28.64■■■□□ 2.18
SLIT3-204ENST00000518140 CCDC85AQ96PX6 553 aaPredicted RBP28.64■■■□□ 2.18
SLIT3-204ENST00000518140 IFIT2P09913 472 aaKnown RBP28.63■■■□□ 2.17
SLIT3-204ENST00000518140 TFCP2Q12800 502 aa28.63■■■□□ 2.17
SLIT3-204ENST00000518140 DDRGK1Q96HY6 314 aa28.63■■■□□ 2.17
SLIT3-204ENST00000518140 TLR7Q9NYK1 1049 aaKnown RBP28.63■■■□□ 2.17
SLIT3-204ENST00000518140 USP42Q9H9J4 1324 aaKnown RBP28.63■■■□□ 2.17
SLIT3-204ENST00000518140 NHSQ6T4R5 1651 aa28.63■■■□□ 2.17
SLIT3-204ENST00000518140 TRMT112Q9UI30 125 aaKnown RBP28.63■■■□□ 2.17
SLIT3-204ENST00000518140 COL5A3P25940 1745 aaPredicted RBP28.62■■■□□ 2.17
SLIT3-204ENST00000518140 PLA2G12BQ9BX93 195 aa28.62■■■□□ 2.17
SLIT3-204ENST00000518140 ATG9AQ7Z3C6 839 aa28.6■■■□□ 2.17
SLIT3-204ENST00000518140 CCNL1Q9UK58 526 aaPredicted RBP28.6■■■□□ 2.17
SLIT3-204ENST00000518140 EP400Q96L91 3159 aa28.6■■■□□ 2.17
SLIT3-204ENST00000518140 TUBGCP6Q96RT7 1819 aa28.6■■■□□ 2.17
SLIT3-204ENST00000518140 CSF1RP07333 972 aa28.6■■■□□ 2.17
SLIT3-204ENST00000518140 SUSD4Q5VX71 490 aa28.6■■■□□ 2.17
SLIT3-204ENST00000518140 FAM177BA6PVY3 158 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 LRRC24Q50LG9 513 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 ECHDC1Q9NTX5 307 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 TTC41PQ6P2S7 1318 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 CDHR2Q9BYE9 1310 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 ZNF831Q5JPB2 1677 aa28.59■■■□□ 2.17
SLIT3-204ENST00000518140 IRS4O14654 1257 aaPredicted RBP28.58■■■□□ 2.17
SLIT3-204ENST00000518140 PUS3Q9BZE2 481 aaKnown RBP28.58■■■□□ 2.17
SLIT3-204ENST00000518140 ANKRD36CQ5JPF3 1778 aa28.58■■■□□ 2.17
SLIT3-204ENST00000518140 CNTNAP4Q9C0A0 1308 aa28.58■■■□□ 2.17
SLIT3-204ENST00000518140 SBF2Q86WG5 1849 aa28.57■■■□□ 2.16
SLIT3-204ENST00000518140 RBM25P49756 843 aaKnown RBP28.57■■■□□ 2.16
SLIT3-204ENST00000518140 CHMLP26374 656 aa28.56■■■□□ 2.16
SLIT3-204ENST00000518140 TNNI3KQ59H18 835 aa28.56■■■□□ 2.16
SLIT3-204ENST00000518140 AMIGO3Q86WK7 504 aa28.56■■■□□ 2.16
SLIT3-204ENST00000518140 TTLL11Q8NHH1 800 aa28.56■■■□□ 2.16
SLIT3-204ENST00000518140 BCL11BQ9C0K0 894 aaPredicted RBP28.56■■■□□ 2.16
SLIT3-204ENST00000518140 FPGT-TNNI3KV9GXZ4 949 aa28.56■■■□□ 2.16
SLIT3-204ENST00000518140 GLRX3O76003 335 aaKnown RBP28.55■■■□□ 2.16
SLIT3-204ENST00000518140 CCDC57Q2TAC2 916 aa28.55■■■□□ 2.16
SLIT3-204ENST00000518140 CASC1Q6TDU7 716 aa28.55■■■□□ 2.16
SLIT3-204ENST00000518140 KRT27Q7Z3Y8 459 aa28.55■■■□□ 2.16
SLIT3-204ENST00000518140 RC3H1Q5TC82 1133 aaKnown RBP28.55■■■□□ 2.16
SLIT3-204ENST00000518140 NIP7Q9Y221 180 aaKnown RBP eCLIP28.55■■■□□ 2.16
SLIT3-204ENST00000518140 EYA2O00167 538 aa28.54■■■□□ 2.16
SLIT3-204ENST00000518140 GREM2Q9H772 168 aa28.54■■■□□ 2.16
SLIT3-204ENST00000518140 DBNLQ9UJU6 430 aaKnown RBP28.54■■■□□ 2.16
SLIT3-204ENST00000518140 ERC2O15083 957 aa28.53■■■□□ 2.16
SLIT3-204ENST00000518140 CTSWP56202 376 aa28.53■■■□□ 2.16
SLIT3-204ENST00000518140 GNPATO15228 680 aa28.52■■■□□ 2.16
SLIT3-204ENST00000518140 RPS6KA4O75676 772 aa28.52■■■□□ 2.16
SLIT3-204ENST00000518140 HCLS1P14317 486 aaPredicted RBP28.52■■■□□ 2.16
SLIT3-204ENST00000518140 GPATCH3Q96I76 525 aa28.52■■■□□ 2.16
SLIT3-204ENST00000518140 USP26Q9BXU7 913 aa28.52■■■□□ 2.16
SLIT3-204ENST00000518140 KIF2CQ99661 725 aa28.52■■■□□ 2.16
SLIT3-204ENST00000518140 UTP14AQ9BVJ6 771 aaKnown RBP28.52■■■□□ 2.16
SLIT3-204ENST00000518140 LRRC4BQ9NT99 713 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms