RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 ADH6P28332 368 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 PCBP4P57723 403 aaKnown RBP7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 DOC2BQ14184 412 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 TBCELQ5QJ74 424 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 POTEAQ6S8J7 498 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 STK32AQ8WU08 396 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 COL26A1Q96A83 441 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 TRIM11Q96F44 468 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 PARP3Q9Y6F1 533 aa7.75□□□□□ -1.17
HMGB3P13-201ENST00000511263 RTN1Q16799 776 aa7.74□□□□□ -1.17
HMGB3P13-201ENST00000511263 ALDH16A1Q8IZ83 802 aa7.74□□□□□ -1.17
HMGB3P13-201ENST00000511263 PHACTR1Q9C0D0 580 aa7.74□□□□□ -1.17
HMGB3P13-201ENST00000511263 STRN4Q9NRL3 753 aa7.74□□□□□ -1.17
HMGB3P13-201ENST00000511263 PIK3R2O00459 728 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 C21orf2O43822 256 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 PRMT3O60678 531 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 FAM182BQ5T319 152 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 ZDHHC1Q8WTX9 485 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 NOP53Q9NZM5 478 aaKnown RBP7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 CXXC1Q9P0U4 656 aaPredicted RBP7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 HCN4Q9Y3Q4 1203 aa7.73□□□□□ -1.17
HMGB3P13-201ENST00000511263 ATP2B4P23634 1241 aa7.72□□□□□ -1.17
HMGB3P13-201ENST00000511263 LAMC2Q13753 1193 aa7.72□□□□□ -1.17
HMGB3P13-201ENST00000511263 SAMD5Q5TGI4 173 aa7.72□□□□□ -1.17
HMGB3P13-201ENST00000511263 ZIC5Q96T25 663 aa7.72□□□□□ -1.17
HMGB3P13-201ENST00000511263 SEMA6BQ9H3T3 888 aa7.72□□□□□ -1.17
HMGB3P13-201ENST00000511263 TXLNAP40222 546 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 FAM69CQ0P6D2 419 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 NEUROD1Q13562 356 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 ZNF468Q5VIY5 522 aaPredicted RBP7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 NGLY1Q96IV0 654 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 PRIMPOLQ96LW4 560 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 PLVAPQ9BX97 442 aa7.71□□□□□ -1.18
HMGB3P13-201ENST00000511263 FAM157BP0CG42 384 aa7.7□□□□□ -1.18
HMGB3P13-201ENST00000511263 EPB42P16452 691 aa7.7□□□□□ -1.18
HMGB3P13-201ENST00000511263 IER5Q5VY09 327 aa7.69□□□□□ -1.18
HMGB3P13-201ENST00000511263 MYO19Q96H55 970 aa7.69□□□□□ -1.18
HMGB3P13-201ENST00000511263 AVENQ9NQS1 362 aaPredicted RBP7.69□□□□□ -1.18
HMGB3P13-201ENST00000511263 PRR12Q9ULL5 1215 aa7.69□□□□□ -1.18
HMGB3P13-201ENST00000511263 EFSO43281 561 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 OCLNQ16625 522 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 C11orf91Q3C1V1 193 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 LRRC69Q6ZNQ3 347 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 PSMG3-AS1Q96PY0 264 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 FAM13BQ9NYF5 915 aa7.68□□□□□ -1.18
HMGB3P13-201ENST00000511263 TMEM88BA6NKF7 163 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 BRD2P25440 801 aaKnown RBP7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 GATA4P43694 442 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 FKBP5Q13451 457 aaPredicted RBP7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 C16orf46Q6P387 395 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 SUSD3Q96L08 255 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 CEP63Q96MT8 703 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 MDFIQ99750 246 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 EFCC1Q9HA90 598 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 MARK1Q9P0L2 795 aa7.67□□□□□ -1.18
HMGB3P13-201ENST00000511263 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 TGFBR3LH3BV60 316 aa7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 LGR5O75473 907 aa7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 FOXD4L6Q3SYB3 417 aaPredicted RBP7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 ZMYM1Q5SVZ6 1142 aa7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 SH3PXD2AQ5TCZ1 1133 aa7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 FOXD4L3Q6VB84 417 aaPredicted RBP7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 KRTAP9-2Q9BYQ4 174 aa7.66□□□□□ -1.18
HMGB3P13-201ENST00000511263 SPATA31C1P0DKV0 1188 aa7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 RSPO4Q2I0M5 234 aaPredicted RBP7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 SYT9Q86SS6 491 aa7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 ABTB2Q8N961 1025 aa7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 RETREG2Q8NC44 543 aa7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 C11orf16Q9NQ32 467 aa7.65□□□□□ -1.18
HMGB3P13-201ENST00000511263 ELOA3CA0A087WX78 387 aaPredicted RBP7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 ELOA3DA6NLF2 546 aaPredicted RBP7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 PATL2C9JE40 543 aaKnown RBP7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 FAM229AH3BQW9 127 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 SSFA2P28290 1259 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 DGKZQ13574 1117 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 ELOA3BQ3SY89 546 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 ELOA3Q8NG57 546 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 BRD7Q9NPI1 651 aa7.64□□□□□ -1.19
HMGB3P13-201ENST00000511263 ARID4AP29374 1257 aaPredicted RBP7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 COL9A3Q14050 684 aaPredicted RBP7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 C8orf86Q6ZUL3 223 aa7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 BTLAQ7Z6A9 289 aa7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 MKNK1Q9BUB5 465 aa7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 QTRT2Q9H974 415 aaKnown RBP7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 TPSG1Q9NRR2 321 aa7.63□□□□□ -1.19
HMGB3P13-201ENST00000511263 KRTAP9-6A0A140TA67 174 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 ARSDP51689 593 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 SFSWAPQ12872 951 aaKnown RBP7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 NKAPLQ5M9Q1 402 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 C7orf43Q8WVR3 580 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 IFT43Q96FT9 208 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 SLC30A3Q99726 388 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 KCNH4Q9UQ05 1017 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 STARD13Q9Y3M8 1113 aa7.62□□□□□ -1.19
HMGB3P13-201ENST00000511263 M0R082 166 aa7.61□□□□□ -1.19
HMGB3P13-201ENST00000511263 RPLP1P05386 114 aaKnown RBP7.61□□□□□ -1.19
HMGB3P13-201ENST00000511263 PCSK2P16519 638 aa7.61□□□□□ -1.19
HMGB3P13-201ENST00000511263 KCNQ4P56696 695 aa7.61□□□□□ -1.19
HMGB3P13-201ENST00000511263 ALKBH2Q6NS38 261 aa7.61□□□□□ -1.19
HMGB3P13-201ENST00000511263 ZNF417Q8TAU3 575 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms