RNA–Protein interactions for RNA: ENST00000509357.5

PDLIM5-213, Transcript of PDZ and LIM domain 5, humanhuman

TSL 5

Gene PDLIM5, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-213ENST00000509357 ZNF34Q8IZ26 560 aa11.27□□□□□ -0.61
PDLIM5-213ENST00000509357 RPGRQ92834 1020 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-213ENST00000509357 UTP14AQ9BVJ6 771 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-213ENST00000509357 PHAXQ9H814 394 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-213ENST00000509357 TNRC6CQ9HCJ0 1690 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-213ENST00000509357 E9PSI1 815 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 ALDH1B1P30837 517 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 C16orf71Q8IYS4 520 aaPredicted RBP11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 CHMP4AQ9BY43 222 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 HYPKQ9NX55 129 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 UBN2Q6ZU65 1347 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 KDM2BQ8NHM5 1336 aa11.26□□□□□ -0.61
PDLIM5-213ENST00000509357 NFKBIEO00221 500 aa11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 CCDC93Q567U6 631 aa11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 ANKRD13DQ6ZTN6 518 aa11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 RBM17Q96I25 401 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 TMX4Q9H1E5 349 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 TAOK3Q9H2K8 898 aa11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 TRMT112Q9UI30 125 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 COL11A2P13942 1736 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-213ENST00000509357 LAMB2P55268 1798 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 BRCA1P38398 1863 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 KLRG2A4D1S0 409 aaPredicted RBP11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 NTSR2O95665 410 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 RIC3Q7Z5B4 369 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 PLBD2Q8NHP8 589 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 ZNF428Q96B54 188 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 NLRP3Q96P20 1036 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 NMRK2Q9NPI5 230 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 ABCC12Q96J65 1359 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 COL4A1P02462 1669 aa11.24□□□□□ -0.61
PDLIM5-213ENST00000509357 DDX60Q8IY21 1712 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 CCDC30Q5VVM6 783 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 DPY19L2Q6NUT2 758 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 NLRP10Q86W26 655 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 RTKN2Q8IZC4 609 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 MYH16Q9H6N6 1097 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 RRAGCQ9HB90 399 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 IBTKQ9P2D0 1353 aaPredicted RBP11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 ARFGEF1Q9Y6D6 1849 aa11.23□□□□□ -0.61
PDLIM5-213ENST00000509357 ATP5J2-PTCD1G3V325 749 aa11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 KIF3CO14782 793 aa11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 SSH1Q8WYL5 1049 aa11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 YTHDC1Q96MU7 727 aaKnown RBP11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 BCL2L13Q9BXK5 485 aa11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 STK31Q9BXU1 1019 aa11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 ZC3H4Q9UPT8 1303 aaKnown RBP11.22□□□□□ -0.61
PDLIM5-213ENST00000509357 DLEC1Q9Y238 1755 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 SH3TC1Q8TE82 1336 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 DDX58O95786 925 aaKnown RBP11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 HCLS1P14317 486 aaPredicted RBP11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 PRELPP51888 382 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 FKBP4Q02790 459 aaKnown RBP eCLIP11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 CRY2Q49AN0 593 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 OLFM4Q6UX06 510 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 MRPL50Q8N5N7 158 aaKnown RBP11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 TNNQ9UQP3 1299 aa11.21□□□□□ -0.61
PDLIM5-213ENST00000509357 RNF123Q5XPI4 1314 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 LTBP3Q9NS15 1303 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 GLTPD2A6NH11 291 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 PPEF1O14829 653 aaPredicted RBP11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 TOMM70O94826 608 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 HOXA10P31260 410 aaPredicted RBP11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 RTL5Q5HYW3 569 aaPredicted RBP11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 SLC10A5Q5PT55 438 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 C3orf67Q6ZVT6 689 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 DDX46Q7L014 1031 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 C7orf43Q8WVR3 580 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 CRAMP1Q96RY5 1269 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 MYD88Q99836 296 aa11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 ZNF277Q9NRM2 450 aaPredicted RBP11.2□□□□□ -0.62
PDLIM5-213ENST00000509357 TAF1P21675 1872 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 CACNA1SQ13698 1873 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 SLC4A2P04920 1241 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 VEGFAP15692 232 aaPredicted RBP11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 CC2D2BQ6DHV5 1058 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 SYNE4Q8N205 404 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 FAM89AQ96GI7 184 aa11.19□□□□□ -0.62
PDLIM5-213ENST00000509357 F6X3S4 739 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 IGKV5-2P06315 115 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 RARSP54136 660 aaKnown RBP11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 FLIIQ13045 1269 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 GRIPAP1Q4V328 841 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 SLC51AQ86UW1 340 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 ISCA1Q9BUE6 129 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 RIC1Q4ADV7 1423 aa11.18□□□□□ -0.62
PDLIM5-213ENST00000509357 SLX4Q8IY92 1834 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 BCAR3O75815 825 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 BBOX1O75936 387 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 HSP90B1P14625 803 aaKnown RBP11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 HSPA6P17066 643 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 IARSP41252 1262 aaKnown RBP11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 RBM46Q8TBY0 533 aaKnown RBP11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 JDP2Q8WYK2 163 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 MAP3K2Q9Y2U5 619 aa11.17□□□□□ -0.62
PDLIM5-213ENST00000509357 ABCC4O15439 1325 aa11.16□□□□□ -0.62
PDLIM5-213ENST00000509357 PI4KAP2A4QPH2 592 aa11.16□□□□□ -0.62
PDLIM5-213ENST00000509357 IRS4O14654 1257 aaPredicted RBP11.16□□□□□ -0.62
PDLIM5-213ENST00000509357 DDNO94850 711 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms