RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 METTL22Q9BUU2 404 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 USP44Q9H0E7 712 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 IL1RAPL2Q9NP60 686 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 RGS12O14924 1447 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 LRRC37A3O60309 1634 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 ONECUT3O60422 494 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 IGKV5-2P06315 115 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 INTS5Q6P9B9 1019 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 LINS1Q8NG48 757 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 ZBTB40Q9NUA8 1239 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 CWC25Q9NXE8 425 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 GRM8O00222 908 aa10.65□□□□□ -0.7
LIMCH1-209ENST00000509277 PKD1L3Q7Z443 1732 aa10.65□□□□□ -0.71
LIMCH1-209ENST00000509277 NEURL1BA8MQ27 555 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 INTS3Q68E01 1043 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 CHMP4BQ9H444 224 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 PNMA6EA0A0J9YXQ4 647 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 PPP1R42Q7Z4L9 355 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 PLCD3Q8N3E9 789 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 SUCLG2Q96I99 432 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 BAG6P46379 1132 aa10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 ARHGEF1Q92888 912 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-209ENST00000509277 ESPNB1AK53 854 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 MSNP26038 577 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 GCKRQ14397 625 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 BICC1Q9H694 974 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 ITGB4P16144 1822 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 IL6STP40189 918 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 TSHZ3Q63HK5 1081 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 LMBR1LQ6UX01 489 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 TOGARAM1Q9Y4F4 1720 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 MAP3K15Q6ZN16 1313 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 HMMRO75330 724 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 ZNF594Q96JF6 807 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 ZNF219Q9P2Y4 722 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 PDZRN3Q9UPQ7 1066 aa10.63□□□□□ -0.71
LIMCH1-209ENST00000509277 IGSF3O75054 1194 aa10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 NBPF5PQ86XG9 351 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 COL15A1P39059 1388 aa10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 PSDA5PKW4 1024 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 MFAP1P55081 439 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 TCIRG1Q13488 830 aa10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 BBXQ8WY36 941 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 SETDB2Q96T68 719 aa10.62□□□□□ -0.71
LIMCH1-209ENST00000509277 ZNF652Q9Y2D9 606 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 SOS1Q07889 1333 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 VGLL3A8MV65 326 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 EIF5P55010 431 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 EPHA10Q5JZY3 1008 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 CEP85Q6P2H3 762 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 GIGYF2Q6Y7W6 1299 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 PROM2Q8N271 834 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 SHANK3Q9BYB0 1731 aa10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 CENPQQ7L2Z9 268 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-209ENST00000509277 IRS4O14654 1257 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 TBC1D9BQ66K14 1250 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 C16orf71Q8IYS4 520 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 ZNF827Q17R98 1081 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 SUSD4Q5VX71 490 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 PDGFDQ9GZP0 370 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 RPS6KA4O75676 772 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 SEC24BO95487 1268 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 BRPF1P55201 1214 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 SIRT2Q8IXJ6 389 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 C5P01031 1676 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 KCPQ6ZWJ8 1503 aa10.6□□□□□ -0.71
LIMCH1-209ENST00000509277 BRWD3Q6RI45 1802 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 G3BP1Q13283 466 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 HELBQ8NG08 1087 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 NEUROD6Q96NK8 337 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 STK32BQ9NY57 414 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 KDM3BQ7LBC6 1761 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 TRAK2O60296 914 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 ALDH1L1O75891 902 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 MAP4K4O95819 1239 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 PLCB2Q00722 1185 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 CCDC57Q2TAC2 916 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 NLRP10Q86W26 655 aa10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 UTP14AQ9BVJ6 771 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-209ENST00000509277 ZBTB7AO95365 584 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 HSP90AB3PQ58FF7 597 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 LRP10Q7Z4F1 713 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 ATF5Q9Y2D1 282 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 ERBB4Q15303 1308 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 CAMTA2O94983 1202 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 AAMPQ13685 434 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 CNNM1Q9NRU3 951 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 MRC1P22897 1456 aa10.58□□□□□ -0.72
LIMCH1-209ENST00000509277 ERFEQ4G0M1 354 aa10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 ANKRD44Q8N8A2 993 aa10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 CCDC191Q8NCU4 936 aa10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 OTUD7AQ8TE49 926 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 UBN2Q6ZU65 1347 aa10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 PTMAP06454 111 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 CDK11BP21127 795 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 CCDC8Q9H0W5 538 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 R3HDM1Q15032 1099 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 FOXD4L5Q5VV16 416 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 RPAP2Q8IXW5 612 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-209ENST00000509277 FOXD4L4Q8WXT5 416 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms