RNA–Protein interactions for RNA: ENST00000505307.5

UBE2D3-220, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5

Gene UBE2D3, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-220ENST00000505307 IFFO2Q5TF58 517 aa26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 RBM17Q96I25 401 aaKnown RBP26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 CRAMP1Q96RY5 1269 aa26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 PSMD1Q99460 953 aa26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 ZNF277Q9NRM2 450 aaPredicted RBP26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 RNF123Q5XPI4 1314 aa26.07■■□□□ 1.76
UBE2D3-220ENST00000505307 HOXB7P09629 217 aa26.06■■□□□ 1.76
UBE2D3-220ENST00000505307 L3MBTL3Q96JM7 780 aaPredicted RBP26.06■■□□□ 1.76
UBE2D3-220ENST00000505307 UTP14AQ9BVJ6 771 aaKnown RBP26.06■■□□□ 1.76
UBE2D3-220ENST00000505307 DDX21Q9NR30 783 aaKnown RBP eCLIP26.06■■□□□ 1.76
UBE2D3-220ENST00000505307 PROSER3Q2NL68 480 aa26.05■■□□□ 1.76
UBE2D3-220ENST00000505307 OLFM4Q6UX06 510 aa26.05■■□□□ 1.76
UBE2D3-220ENST00000505307 COPS6Q7L5N1 327 aa26.05■■□□□ 1.76
UBE2D3-220ENST00000505307 SYNE4Q8N205 404 aa26.05■■□□□ 1.76
UBE2D3-220ENST00000505307 NLRP3Q96P20 1036 aa26.05■■□□□ 1.76
UBE2D3-220ENST00000505307 IARSP41252 1262 aaKnown RBP26.04■■□□□ 1.76
UBE2D3-220ENST00000505307 SLC10A5Q5PT55 438 aa26.04■■□□□ 1.76
UBE2D3-220ENST00000505307 LAS1LQ9Y4W2 734 aaKnown RBP26.04■■□□□ 1.76
UBE2D3-220ENST00000505307 ANXA1P04083 346 aa26.03■■□□□ 1.76
UBE2D3-220ENST00000505307 CHADLQ6NUI6 762 aa26.02■■□□□ 1.76
UBE2D3-220ENST00000505307 JMYQ8N9B5 988 aa26.02■■□□□ 1.76
UBE2D3-220ENST00000505307 XAGE3Q8WTP9 111 aa26.02■■□□□ 1.76
UBE2D3-220ENST00000505307 NECTIN2Q92692 538 aa26.02■■□□□ 1.76
UBE2D3-220ENST00000505307 CFAP44Q96MT7 982 aa26.02■■□□□ 1.76
UBE2D3-220ENST00000505307 AIMP1Q12904 312 aaKnown RBP26.01■■□□□ 1.75
UBE2D3-220ENST00000505307 SNED1Q8TER0 1413 aa26.01■■□□□ 1.75
UBE2D3-220ENST00000505307 JDP2Q8WYK2 163 aa26.01■■□□□ 1.75
UBE2D3-220ENST00000505307 TMX4Q9H1E5 349 aaPredicted RBP26.01■■□□□ 1.75
UBE2D3-220ENST00000505307 FZD9O00144 591 aa26■■□□□ 1.75
UBE2D3-220ENST00000505307 TCIRG1Q13488 830 aa26■■□□□ 1.75
UBE2D3-220ENST00000505307 PPEF1O14829 653 aaPredicted RBP25.99■■□□□ 1.75
UBE2D3-220ENST00000505307 HDGFL1Q5TGJ6 251 aa25.99■■□□□ 1.75
UBE2D3-220ENST00000505307 NLRP10Q86W26 655 aa25.99■■□□□ 1.75
UBE2D3-220ENST00000505307 DBF4Q9UBU7 674 aaPredicted RBP25.99■■□□□ 1.75
UBE2D3-220ENST00000505307 SCN4AP35499 1836 aa25.98■■□□□ 1.75
UBE2D3-220ENST00000505307 CALD1Q05682 793 aaKnown RBP25.98■■□□□ 1.75
UBE2D3-220ENST00000505307 KRT24Q2M2I5 525 aa25.98■■□□□ 1.75
UBE2D3-220ENST00000505307 LDHDQ86WU2 507 aa25.98■■□□□ 1.75
UBE2D3-220ENST00000505307 TAF1DQ9H5J8 278 aaPredicted RBP25.98■■□□□ 1.75
UBE2D3-220ENST00000505307 ZNF541Q9H0D2 1346 aa25.97■■□□□ 1.75
UBE2D3-220ENST00000505307 CHPF2Q9P2E5 772 aa25.97■■□□□ 1.75
UBE2D3-220ENST00000505307 C3orf67Q6ZVT6 689 aa25.96■■□□□ 1.75
UBE2D3-220ENST00000505307 GPC2Q8N158 579 aa25.96■■□□□ 1.75
UBE2D3-220ENST00000505307 PLBD2Q8NHP8 589 aa25.96■■□□□ 1.75
UBE2D3-220ENST00000505307 HACL1Q9UJ83 578 aa25.96■■□□□ 1.75
UBE2D3-220ENST00000505307 EIF6P56537 245 aaKnown RBP25.95■■□□□ 1.74
UBE2D3-220ENST00000505307 VPS33BQ9H267 617 aa25.95■■□□□ 1.74
UBE2D3-220ENST00000505307 HYPKQ9NX55 129 aa25.95■■□□□ 1.74
UBE2D3-220ENST00000505307 TRMT112Q9UI30 125 aaKnown RBP25.95■■□□□ 1.74
UBE2D3-220ENST00000505307 ATP6V0A2Q9Y487 856 aa25.95■■□□□ 1.74
UBE2D3-220ENST00000505307 SH3TC1Q8TE82 1336 aa25.94■■□□□ 1.74
UBE2D3-220ENST00000505307 BBOX1O75936 387 aa25.94■■□□□ 1.74
UBE2D3-220ENST00000505307 DUSP27Q5VZP5 1158 aa25.94■■□□□ 1.74
UBE2D3-220ENST00000505307 ANKRD13DQ6ZTN6 518 aa25.94■■□□□ 1.74
UBE2D3-220ENST00000505307 ANKRD36CQ5JPF3 1778 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 APAF1O14727 1248 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 ZNF853P0CG23 659 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 PNMA8AQ86V59 439 aaPredicted RBP25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 LARGE2Q8N3Y3 721 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 MBIPQ9NS73 344 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 IFT57Q9NWB7 429 aa25.93■■□□□ 1.74
UBE2D3-220ENST00000505307 POTEIP0CG38 1075 aa25.92■■□□□ 1.74
UBE2D3-220ENST00000505307 POTEJP0CG39 1038 aa25.92■■□□□ 1.74
UBE2D3-220ENST00000505307 GNAI1P63096 354 aa25.92■■□□□ 1.74
UBE2D3-220ENST00000505307 CREBZFQ9NS37 354 aa25.92■■□□□ 1.74
UBE2D3-220ENST00000505307 ABCC4O15439 1325 aa25.91■■□□□ 1.74
UBE2D3-220ENST00000505307 EPHX2P34913 555 aa25.91■■□□□ 1.74
UBE2D3-220ENST00000505307 SUPT20HQ8NEM7 779 aa25.91■■□□□ 1.74
UBE2D3-220ENST00000505307 CHMP4AQ9BY43 222 aa25.91■■□□□ 1.74
UBE2D3-220ENST00000505307 TCERG1O14776 1098 aaKnown RBP25.9■■□□□ 1.74
UBE2D3-220ENST00000505307 HCLS1P14317 486 aaPredicted RBP25.9■■□□□ 1.74
UBE2D3-220ENST00000505307 DDX46Q7L014 1031 aaKnown RBP25.9■■□□□ 1.74
UBE2D3-220ENST00000505307 EAPPQ56P03 285 aaPredicted RBP25.89■■□□□ 1.74
UBE2D3-220ENST00000505307 TMC4Q7Z404 712 aa25.89■■□□□ 1.74
UBE2D3-220ENST00000505307 SP8Q8IXZ3 490 aa25.89■■□□□ 1.74
UBE2D3-220ENST00000505307 NIM1KQ8IY84 436 aa25.89■■□□□ 1.74
UBE2D3-220ENST00000505307 ISCA1Q9BUE6 129 aa25.89■■□□□ 1.74
UBE2D3-220ENST00000505307 RTFDC1Q9BY42 306 aaPredicted RBP25.88■■□□□ 1.73
UBE2D3-220ENST00000505307 PPIP5K2O43314 1243 aa25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 LMOD1P29536 600 aaPredicted RBP25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 TRIM28Q13263 835 aaKnown RBP25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 GRAPQ13588 217 aa25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 GRAPLQ8TC17 118 aaPredicted RBP25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 CLEC11AQ9Y240 323 aa25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 PASKQ96RG2 1323 aa25.87■■□□□ 1.73
UBE2D3-220ENST00000505307 GJA3Q9Y6H8 435 aa25.86■■□□□ 1.73
UBE2D3-220ENST00000505307 DPP8Q6V1X1 898 aaPredicted RBP25.85■■□□□ 1.73
UBE2D3-220ENST00000505307 MPNDQ8N594 471 aa25.85■■□□□ 1.73
UBE2D3-220ENST00000505307 ITGBL1O95965 494 aaPredicted RBP25.84■■□□□ 1.73
UBE2D3-220ENST00000505307 ZEB1P37275 1124 aaPredicted RBP25.84■■□□□ 1.73
UBE2D3-220ENST00000505307 GOLGA2Q08379 1002 aa25.84■■□□□ 1.73
UBE2D3-220ENST00000505307 COL4A5P29400 1685 aa25.83■■□□□ 1.73
UBE2D3-220ENST00000505307 SF3B3Q15393 1217 aaKnown RBP25.83■■□□□ 1.73
UBE2D3-220ENST00000505307 AOC3Q16853 763 aa25.83■■□□□ 1.73
UBE2D3-220ENST00000505307 ATP5J2-PTCD1G3V325 749 aa25.82■■□□□ 1.72
UBE2D3-220ENST00000505307 HSP90B1P14625 803 aaKnown RBP25.82■■□□□ 1.72
UBE2D3-220ENST00000505307 RIC3Q7Z5B4 369 aa25.82■■□□□ 1.72
UBE2D3-220ENST00000505307 ZNRF3Q9ULT6 936 aa25.82■■□□□ 1.72
UBE2D3-220ENST00000505307 SLC51AQ86UW1 340 aa25.81■■□□□ 1.72
UBE2D3-220ENST00000505307 FAM89AQ96GI7 184 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms