RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 COPS6Q7L5N1 327 aa20.41■□□□□ 0.86
HDAC4-213ENST00000496347 C7orf43Q8WVR3 580 aa20.4■□□□□ 0.86
HDAC4-213ENST00000496347 NMRK2Q9NPI5 230 aa20.4■□□□□ 0.86
HDAC4-213ENST00000496347 WDR90Q96KV7 1748 aa20.39■□□□□ 0.86
HDAC4-213ENST00000496347 ALDH1B1P30837 517 aa20.39■□□□□ 0.85
HDAC4-213ENST00000496347 NCBP3Q53F19 620 aaKnown RBP20.39■□□□□ 0.85
HDAC4-213ENST00000496347 HYPKQ9NX55 129 aa20.39■□□□□ 0.85
HDAC4-213ENST00000496347 ZNF219Q9P2Y4 722 aaPredicted RBP20.39■□□□□ 0.85
HDAC4-213ENST00000496347 SNED1Q8TER0 1413 aa20.38■□□□□ 0.85
HDAC4-213ENST00000496347 AIMP1Q12904 312 aaKnown RBP20.38■□□□□ 0.85
HDAC4-213ENST00000496347 RPGRQ92834 1020 aaKnown RBP20.38■□□□□ 0.85
HDAC4-213ENST00000496347 UTP14AQ9BVJ6 771 aaKnown RBP20.38■□□□□ 0.85
HDAC4-213ENST00000496347 DDX60Q8IY21 1712 aaKnown RBP20.37■□□□□ 0.85
HDAC4-213ENST00000496347 TOMM70O94826 608 aa20.37■□□□□ 0.85
HDAC4-213ENST00000496347 HOXA10P31260 410 aaPredicted RBP20.37■□□□□ 0.85
HDAC4-213ENST00000496347 PLBD2Q8NHP8 589 aa20.37■□□□□ 0.85
HDAC4-213ENST00000496347 CHMP4AQ9BY43 222 aa20.37■□□□□ 0.85
HDAC4-213ENST00000496347 GLTPD2A6NH11 291 aa20.36■□□□□ 0.85
HDAC4-213ENST00000496347 TCIRG1Q13488 830 aa20.36■□□□□ 0.85
HDAC4-213ENST00000496347 NLRP10Q86W26 655 aa20.36■□□□□ 0.85
HDAC4-213ENST00000496347 RTKN2Q8IZC4 609 aa20.36■□□□□ 0.85
HDAC4-213ENST00000496347 IL16Q14005 1332 aa20.34■□□□□ 0.85
HDAC4-213ENST00000496347 FKBP4Q02790 459 aaKnown RBP eCLIP20.34■□□□□ 0.85
HDAC4-213ENST00000496347 SLC10A5Q5PT55 438 aa20.34■□□□□ 0.85
HDAC4-213ENST00000496347 CC2D2BQ6DHV5 1058 aa20.34■□□□□ 0.85
HDAC4-213ENST00000496347 WWC1Q8IX03 1113 aa20.34■□□□□ 0.85
HDAC4-213ENST00000496347 C16orf71Q8IYS4 520 aaPredicted RBP20.34■□□□□ 0.85
HDAC4-213ENST00000496347 RBM46Q8TBY0 533 aaKnown RBP20.34■□□□□ 0.85
HDAC4-213ENST00000496347 SH3TC1Q8TE82 1336 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 HSPA6P17066 643 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 GRIPAP1Q4V328 841 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 ANKRD13DQ6ZTN6 518 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 RBM17Q96I25 401 aaKnown RBP20.33■□□□□ 0.85
HDAC4-213ENST00000496347 NLRP3Q96P20 1036 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 CRAMP1Q96RY5 1269 aa20.33■□□□□ 0.85
HDAC4-213ENST00000496347 CACNA1FO60840 1977 aa20.33■□□□□ 0.84
HDAC4-213ENST00000496347 GOLGA2Q08379 1002 aa20.32■□□□□ 0.84
HDAC4-213ENST00000496347 LRRC37AA6NMS7 1700 aa20.32■□□□□ 0.84
HDAC4-213ENST00000496347 DPY19L2Q6NUT2 758 aa20.31■□□□□ 0.84
HDAC4-213ENST00000496347 C3orf67Q6ZVT6 689 aa20.31■□□□□ 0.84
HDAC4-213ENST00000496347 C8orf58Q8NAV2 365 aa20.31■□□□□ 0.84
HDAC4-213ENST00000496347 PSMD1Q99460 953 aa20.31■□□□□ 0.84
HDAC4-213ENST00000496347 TRMT112Q9UI30 125 aaKnown RBP20.31■□□□□ 0.84
HDAC4-213ENST00000496347 SCN4AP35499 1836 aa20.31■□□□□ 0.84
HDAC4-213ENST00000496347 PPEF1O14829 653 aaPredicted RBP20.3■□□□□ 0.84
HDAC4-213ENST00000496347 CCDC30Q5VVM6 783 aa20.3■□□□□ 0.84
HDAC4-213ENST00000496347 ISCA1Q9BUE6 129 aa20.3■□□□□ 0.84
HDAC4-213ENST00000496347 VEGFAP15692 232 aaPredicted RBP20.29■□□□□ 0.84
HDAC4-213ENST00000496347 FSTL1Q12841 308 aa20.29■□□□□ 0.84
HDAC4-213ENST00000496347 OLFM4Q6UX06 510 aa20.29■□□□□ 0.84
HDAC4-213ENST00000496347 TSR2Q969E8 191 aaKnown RBP20.29■□□□□ 0.84
HDAC4-213ENST00000496347 RRAGCQ9HB90 399 aa20.29■□□□□ 0.84
HDAC4-213ENST00000496347 ELL2O00472 640 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-213ENST00000496347 TRIM28Q13263 835 aaKnown RBP20.28■□□□□ 0.84
HDAC4-213ENST00000496347 ZNF277Q9NRM2 450 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-213ENST00000496347 ABCC4O15439 1325 aa20.27■□□□□ 0.84
HDAC4-213ENST00000496347 FANCIQ9NVI1 1328 aa20.27■□□□□ 0.83
HDAC4-213ENST00000496347 DDX58O95786 925 aaKnown RBP20.26■□□□□ 0.83
HDAC4-213ENST00000496347 HCLS1P14317 486 aaPredicted RBP20.26■□□□□ 0.83
HDAC4-213ENST00000496347 IARSP41252 1262 aaKnown RBP20.26■□□□□ 0.83
HDAC4-213ENST00000496347 RIC3Q7Z5B4 369 aa20.26■□□□□ 0.83
HDAC4-213ENST00000496347 TSPYL6Q8N831 410 aa20.26■□□□□ 0.83
HDAC4-213ENST00000496347 SMC1BQ8NDV3 1235 aa20.26■□□□□ 0.83
HDAC4-213ENST00000496347 APLP1P51693 650 aa20.25■□□□□ 0.83
HDAC4-213ENST00000496347 WDR63Q8IWG1 891 aa20.25■□□□□ 0.83
HDAC4-213ENST00000496347 STK31Q9BXU1 1019 aa20.25■□□□□ 0.83
HDAC4-213ENST00000496347 TMX4Q9H1E5 349 aaPredicted RBP20.25■□□□□ 0.83
HDAC4-213ENST00000496347 PHAXQ9H814 394 aaKnown RBP20.25■□□□□ 0.83
HDAC4-213ENST00000496347 ATP6V0A2Q9Y487 856 aa20.25■□□□□ 0.83
HDAC4-213ENST00000496347 TAF1P21675 1872 aa20.24■□□□□ 0.83
HDAC4-213ENST00000496347 COL4A5P29400 1685 aa20.24■□□□□ 0.83
HDAC4-213ENST00000496347 ATP5J2-PTCD1G3V325 749 aa20.24■□□□□ 0.83
HDAC4-213ENST00000496347 TWISTNBQ3B726 338 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-213ENST00000496347 SYNE4Q8N205 404 aa20.24■□□□□ 0.83
HDAC4-213ENST00000496347 L3MBTL3Q96JM7 780 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-213ENST00000496347 MYH3P11055 1940 aa20.23■□□□□ 0.83
HDAC4-213ENST00000496347 BBOX1O75936 387 aa20.23■□□□□ 0.83
HDAC4-213ENST00000496347 HSP90B1P14625 803 aaKnown RBP20.23■□□□□ 0.83
HDAC4-213ENST00000496347 GRAPQ13588 217 aa20.23■□□□□ 0.83
HDAC4-213ENST00000496347 DDX46Q7L014 1031 aaKnown RBP20.23■□□□□ 0.83
HDAC4-213ENST00000496347 TMC4Q7Z404 712 aa20.23■□□□□ 0.83
HDAC4-213ENST00000496347 GRAPLQ8TC17 118 aaPredicted RBP20.23■□□□□ 0.83
HDAC4-213ENST00000496347 ZNF541Q9H0D2 1346 aa20.23■□□□□ 0.83
HDAC4-213ENST00000496347 IQCA1LA6NCM1 817 aa20.22■□□□□ 0.83
HDAC4-213ENST00000496347 JDP2Q8WYK2 163 aa20.22■□□□□ 0.83
HDAC4-213ENST00000496347 FAM89AQ96GI7 184 aa20.22■□□□□ 0.83
HDAC4-213ENST00000496347 LTBP1Q14766 1721 aa20.22■□□□□ 0.83
HDAC4-213ENST00000496347 DUOX1Q9NRD9 1551 aa20.21■□□□□ 0.83
HDAC4-213ENST00000496347 FZD9O00144 591 aa20.21■□□□□ 0.83
HDAC4-213ENST00000496347 SF3B3Q15393 1217 aaKnown RBP20.21■□□□□ 0.83
HDAC4-213ENST00000496347 ZBTB38Q8NAP3 1195 aaPredicted RBP20.21■□□□□ 0.83
HDAC4-213ENST00000496347 CCDC191Q8NCU4 936 aa20.21■□□□□ 0.83
HDAC4-213ENST00000496347 POTECB2RU33 542 aa20.2■□□□□ 0.82
HDAC4-213ENST00000496347 DDNO94850 711 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-213ENST00000496347 FAM9BQ8IZU0 186 aa20.2■□□□□ 0.82
HDAC4-213ENST00000496347 SUPT20HQ8NEM7 779 aa20.2■□□□□ 0.82
HDAC4-213ENST00000496347 MYD88Q99836 296 aa20.2■□□□□ 0.82
HDAC4-213ENST00000496347 METTL22Q9BUU2 404 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-213ENST00000496347 VPS33BQ9H267 617 aa20.2■□□□□ 0.82
HDAC4-213ENST00000496347 IRS4O14654 1257 aaPredicted RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms