RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, human

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-222	ENST00000495522	WDR33	Q9C0J8	1336 aa	Known RBP	18.47	■□□□□ 0.55
CALD1-222	ENST00000495522	MBD3	O95983	291 aa		18.47	■□□□□ 0.55
CALD1-222	ENST00000495522	CAST	P20810	708 aa	Known RBP	18.47	■□□□□ 0.55
CALD1-222	ENST00000495522	PIP4K2A	P48426	406 aa	Predicted RBP	18.47	■□□□□ 0.55
CALD1-222	ENST00000495522	RRAGD	Q9NQL2	400 aa	Predicted RBP	18.47	■□□□□ 0.55
CALD1-222	ENST00000495522	PRPF40B	Q6NWY9	871 aa	Known RBP	18.46	■□□□□ 0.55
CALD1-222	ENST00000495522	BRINP3	Q76B58	766 aa		18.46	■□□□□ 0.55
CALD1-222	ENST00000495522	CHAMP1	Q96JM3	812 aa		18.46	■□□□□ 0.55
CALD1-222	ENST00000495522	TM6SF1	Q9BZW5	370 aa		18.46	■□□□□ 0.55
CALD1-222	ENST00000495522	RUFY3	Q7L099	469 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	ERBB4	Q15303	1308 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	WDR17	Q8IZU2	1322 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	PCDH11X	Q9BZA7	1347 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	PCDH11Y	Q9BZA8	1340 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	NASP	P49321	788 aa	Predicted RBP	18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	NMI	Q13287	307 aa	Predicted RBP	18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	RABL6	Q3YEC7	729 aa	Predicted RBP	18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	PLBD2	Q8NHP8	589 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	SNRK	Q9NRH2	765 aa		18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.45	■□□□□ 0.54
CALD1-222	ENST00000495522	RFX5	P48382	616 aa	Predicted RBP	18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	NECTIN1	Q15223	517 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	VPS53	Q5VIR6	699 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	UBE3B	Q7Z3V4	1068 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	JAKMIP1	Q96N16	626 aa	Known RBP	18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	FSD1	Q9BTV5	496 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	BOLA2	Q9H3K6	86 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	PRDM11	Q9NQV5	511 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	ZKSCAN1	P17029	563 aa	Predicted RBP	18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	FAM227B	Q96M60	508 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	ZSWIM6	Q9HCJ5	1215 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	CYP46A1	Q9Y6A2	500 aa		18.44	■□□□□ 0.54
CALD1-222	ENST00000495522	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.43	■□□□□ 0.54
CALD1-222	ENST00000495522	PTPN12	Q05209	780 aa	Known RBP	18.43	■□□□□ 0.54
CALD1-222	ENST00000495522	ZCRB1	Q8TBF4	217 aa	Known RBP	18.43	■□□□□ 0.54
CALD1-222	ENST00000495522	MAP4K1	Q92918	833 aa		18.43	■□□□□ 0.54
CALD1-222	ENST00000495522	PDRG1	Q9NUG6	133 aa		18.43	■□□□□ 0.54
CALD1-222	ENST00000495522	RBM8A	Q9Y5S9	174 aa	Known RBP	18.43	■□□□□ 0.54
CALD1-222	ENST00000495522		A0A087WZG4	1122 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	ATP5J2-PTCD1	G3V325	749 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	PTCD1	O75127	700 aa	Known RBP	18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	TOM1L2	Q6ZVM7	507 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	JARID2	Q92833	1246 aa	Predicted RBP	18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	RBM27	Q9P2N5	1060 aa	Known RBP	18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	CPA1	P15085	419 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	KCNJ4	P48050	445 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	CCDC173	Q0VFZ6	552 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	ADCK5	Q3MIX3	580 aa		18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	ANP32B	Q92688	251 aa	Known RBP	18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	ZSCAN31	Q96LW9	406 aa	Predicted RBP	18.42	■□□□□ 0.54
CALD1-222	ENST00000495522	ERVV-2	B6SEH9	535 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	CASP7	P55210	303 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	GLIPR1L2	Q4G1C9	344 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	CREB3L3	Q68CJ9	461 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	TMEM63C	Q9P1W3	806 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522		A0A0D9SFI3	127 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	TNNI3K	Q59H18	835 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	TRIM44	Q96DX7	344 aa	Predicted RBP	18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	SH2B1	Q9NRF2	756 aa	Predicted RBP	18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	SMC3	Q9UQE7	1217 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	FPGT-TNNI3K	V9GXZ4	949 aa		18.41	■□□□□ 0.54
CALD1-222	ENST00000495522	UBR2	Q8IWV8	1755 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	ATP5J	P18859	108 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	TFCP2	Q12800	502 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	LARP6	Q9BRS8	491 aa	Known RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	MED23	Q9ULK4	1368 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	COL5A2	P05997	1499 aa	Predicted RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	NBPF26	B4DH59	902 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	NBPF14	Q5TI25	921 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	NBPF10	Q6P3W6	841 aa	Known RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	NBPF15	Q8N660	670 aa		18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	DBNL	Q9UJU6	430 aa	Known RBP	18.4	■□□□□ 0.54
CALD1-222	ENST00000495522	SOS2	Q07890	1332 aa	Predicted RBP	18.39	■□□□□ 0.54
CALD1-222	ENST00000495522	ZSCAN22	P10073	491 aa	Predicted RBP	18.39	■□□□□ 0.53
CALD1-222	ENST00000495522	RNF20	Q5VTR2	975 aa		18.39	■□□□□ 0.53
CALD1-222	ENST00000495522	PPP1R9B	Q96SB3	815 aa		18.39	■□□□□ 0.53
CALD1-222	ENST00000495522	SLC27A2	O14975	620 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	STX6	O43752	255 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	PSMA5	P28066	241 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	PRIM1	P49642	420 aa	Known RBP	18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	NKX1-1	Q15270	411 aa	Predicted RBP	18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	LRSAM1	Q6UWE0	723 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	JCAD	Q9P266	1359 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	LARGE1	O95461	756 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	SYT1	P21579	422 aa		18.38	■□□□□ 0.53
CALD1-222	ENST00000495522	PAPPA	Q13219	1627 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	KCP	Q6ZWJ8	1503 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	RFX7	Q2KHR2	1363 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522		H7C1W4	665 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	IL2RB	P14784	551 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	SYAP1	Q96A49	352 aa	Predicted RBP	18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	CARD10	Q9BWT7	1032 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	SLAIN2	Q9P270	581 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	NUP188	Q5SRE5	1749 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	CLCN1	P35523	988 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	LMBR1L	Q6UX01	489 aa		18.37	■□□□□ 0.53
CALD1-222	ENST00000495522	FOXD4L3	Q6VB84	417 aa	Predicted RBP	18.37	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms