RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 PARP10Q53GL7 1025 aa30.5■■■□□ 2.47
COL27A1-208ENST00000494780 PPP1R42Q7Z4L9 355 aa30.5■■■□□ 2.47
COL27A1-208ENST00000494780 TAF1DQ9H5J8 278 aaPredicted RBP30.5■■■□□ 2.47
COL27A1-208ENST00000494780 MYBBP1AQ9BQG0 1328 aaKnown RBP30.49■■■□□ 2.47
COL27A1-208ENST00000494780 FZD9O00144 591 aa30.48■■■□□ 2.47
COL27A1-208ENST00000494780 GRIPAP1Q4V328 841 aa30.48■■■□□ 2.47
COL27A1-208ENST00000494780 LDHDQ86WU2 507 aa30.48■■■□□ 2.47
COL27A1-208ENST00000494780 CRAMP1Q96RY5 1269 aa30.48■■■□□ 2.47
COL27A1-208ENST00000494780 DDX10Q13206 875 aaKnown RBP30.47■■■□□ 2.47
COL27A1-208ENST00000494780 RBM17Q96I25 401 aaKnown RBP30.47■■■□□ 2.47
COL27A1-208ENST00000494780 CREBZFQ9NS37 354 aa30.46■■■□□ 2.47
COL27A1-208ENST00000494780 JDP2Q8WYK2 163 aa30.45■■■□□ 2.47
COL27A1-208ENST00000494780 HACL1Q9UJ83 578 aa30.45■■■□□ 2.47
COL27A1-208ENST00000494780 PROSER3Q2NL68 480 aa30.44■■■□□ 2.46
COL27A1-208ENST00000494780 NLRP3Q96P20 1036 aa30.43■■■□□ 2.46
COL27A1-208ENST00000494780 UTP14AQ9BVJ6 771 aaKnown RBP30.43■■■□□ 2.46
COL27A1-208ENST00000494780 ANXA1P04083 346 aa30.42■■■□□ 2.46
COL27A1-208ENST00000494780 SLC10A5Q5PT55 438 aa30.42■■■□□ 2.46
COL27A1-208ENST00000494780 CCDC146Q8IYE0 955 aa30.42■■■□□ 2.46
COL27A1-208ENST00000494780 GPC2Q8N158 579 aa30.42■■■□□ 2.46
COL27A1-208ENST00000494780 RNF123Q5XPI4 1314 aa30.42■■■□□ 2.46
COL27A1-208ENST00000494780 PPEF1O14829 653 aaPredicted RBP30.41■■■□□ 2.46
COL27A1-208ENST00000494780 EPHX2P34913 555 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 NEUROD2Q15784 382 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 HSP90AB3PQ58FF7 597 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 C3orf67Q6ZVT6 689 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 RUNDC1Q96C34 613 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 PASKQ96RG2 1323 aa30.41■■■□□ 2.46
COL27A1-208ENST00000494780 CHL1O00533 1208 aa30.4■■■□□ 2.46
COL27A1-208ENST00000494780 EAPPQ56P03 285 aaPredicted RBP30.4■■■□□ 2.46
COL27A1-208ENST00000494780 EIF6P56537 245 aaKnown RBP30.39■■■□□ 2.46
COL27A1-208ENST00000494780 WDR43Q15061 677 aaKnown RBP eCLIP30.39■■■□□ 2.46
COL27A1-208ENST00000494780 COL13A1Q5TAT6 717 aaPredicted RBP30.39■■■□□ 2.46
COL27A1-208ENST00000494780 COPS6Q7L5N1 327 aa30.39■■■□□ 2.46
COL27A1-208ENST00000494780 PNMA8AQ86V59 439 aaPredicted RBP30.39■■■□□ 2.46
COL27A1-208ENST00000494780 XAGE3Q8WTP9 111 aa30.38■■■□□ 2.45
COL27A1-208ENST00000494780 NECTIN2Q92692 538 aa30.38■■■□□ 2.45
COL27A1-208ENST00000494780 HSPA1AP0DMV8 641 aaKnown RBP30.37■■■□□ 2.45
COL27A1-208ENST00000494780 HSPA1BP0DMV9 641 aaKnown RBP30.37■■■□□ 2.45
COL27A1-208ENST00000494780 AIMP1Q12904 312 aaKnown RBP30.37■■■□□ 2.45
COL27A1-208ENST00000494780 TMX4Q9H1E5 349 aaPredicted RBP30.37■■■□□ 2.45
COL27A1-208ENST00000494780 DDX21Q9NR30 783 aaKnown RBP eCLIP30.37■■■□□ 2.45
COL27A1-208ENST00000494780 TRIM35Q9UPQ4 493 aa30.37■■■□□ 2.45
COL27A1-208ENST00000494780 CLEC11AQ9Y240 323 aa30.37■■■□□ 2.45
COL27A1-208ENST00000494780 ADAMTSL1Q8N6G6 1762 aa30.36■■■□□ 2.45
COL27A1-208ENST00000494780 ITGBL1O95965 494 aaPredicted RBP30.36■■■□□ 2.45
COL27A1-208ENST00000494780 LARGE2Q8N3Y3 721 aa30.36■■■□□ 2.45
COL27A1-208ENST00000494780 COL4A5P29400 1685 aa30.36■■■□□ 2.45
COL27A1-208ENST00000494780 TCERG1O14776 1098 aaKnown RBP30.35■■■□□ 2.45
COL27A1-208ENST00000494780 NLRP10Q86W26 655 aa30.35■■■□□ 2.45
COL27A1-208ENST00000494780 MKRN1Q9UHC7 482 aaKnown RBP30.35■■■□□ 2.45
COL27A1-208ENST00000494780 ANKRD36CQ5JPF3 1778 aa30.35■■■□□ 2.45
COL27A1-208ENST00000494780 ATP6V0A2Q9Y487 856 aa30.34■■■□□ 2.45
COL27A1-208ENST00000494780 LAS1LQ9Y4W2 734 aaKnown RBP30.34■■■□□ 2.45
COL27A1-208ENST00000494780 TCIRG1Q13488 830 aa30.33■■■□□ 2.45
COL27A1-208ENST00000494780 KRT24Q2M2I5 525 aa30.33■■■□□ 2.45
COL27A1-208ENST00000494780 SLC51AQ86UW1 340 aa30.33■■■□□ 2.45
COL27A1-208ENST00000494780 ADAMTS8Q9UP79 889 aa30.33■■■□□ 2.45
COL27A1-208ENST00000494780 GJA3Q9Y6H8 435 aa30.33■■■□□ 2.45
COL27A1-208ENST00000494780 ABCC4O15439 1325 aa30.32■■■□□ 2.44
COL27A1-208ENST00000494780 HOXB7P09629 217 aa30.32■■■□□ 2.44
COL27A1-208ENST00000494780 VPS33BQ9H267 617 aa30.32■■■□□ 2.44
COL27A1-208ENST00000494780 CNTNAP1P78357 1384 aa30.31■■■□□ 2.44
COL27A1-208ENST00000494780 TMEM88BA6NKF7 163 aa30.31■■■□□ 2.44
COL27A1-208ENST00000494780 NIM1KQ8IY84 436 aa30.31■■■□□ 2.44
COL27A1-208ENST00000494780 BBOX1O75936 387 aa30.3■■■□□ 2.44
COL27A1-208ENST00000494780 LMOD1P29536 600 aaPredicted RBP30.3■■■□□ 2.44
COL27A1-208ENST00000494780 CHPF2Q9P2E5 772 aa30.3■■■□□ 2.44
COL27A1-208ENST00000494780 TRMT112Q9UI30 125 aaKnown RBP30.3■■■□□ 2.44
COL27A1-208ENST00000494780 PPIP5K2O43314 1243 aa30.29■■■□□ 2.44
COL27A1-208ENST00000494780 HCLS1P14317 486 aaPredicted RBP30.29■■■□□ 2.44
COL27A1-208ENST00000494780 HDGFL1Q5TGJ6 251 aa30.29■■■□□ 2.44
COL27A1-208ENST00000494780 CNTROBQ8N137 903 aa30.29■■■□□ 2.44
COL27A1-208ENST00000494780 SUPT20HQ8NEM7 779 aa30.29■■■□□ 2.44
COL27A1-208ENST00000494780 SH3TC1Q8TE82 1336 aa30.28■■■□□ 2.44
COL27A1-208ENST00000494780 RTFDC1Q9BY42 306 aaPredicted RBP30.28■■■□□ 2.44
COL27A1-208ENST00000494780 MAP1SQ66K74 1059 aaPredicted RBP30.27■■■□□ 2.44
COL27A1-208ENST00000494780 SP8Q8IXZ3 490 aa30.27■■■□□ 2.44
COL27A1-208ENST00000494780 PLBD2Q8NHP8 589 aa30.27■■■□□ 2.44
COL27A1-208ENST00000494780 CFAP44Q96MT7 982 aa30.27■■■□□ 2.44
COL27A1-208ENST00000494780 PCNTO95613 3336 aa30.27■■■□□ 2.44
COL27A1-208ENST00000494780 LAMB2P55268 1798 aa30.26■■■□□ 2.44
COL27A1-208ENST00000494780 SCNN1DP51172 638 aa30.26■■■□□ 2.43
COL27A1-208ENST00000494780 AOC3Q16853 763 aa30.26■■■□□ 2.43
COL27A1-208ENST00000494780 DDX46Q7L014 1031 aaKnown RBP30.26■■■□□ 2.43
COL27A1-208ENST00000494780 TNS4Q8IZW8 715 aa30.26■■■□□ 2.43
COL27A1-208ENST00000494780 DBF4Q9UBU7 674 aaPredicted RBP30.26■■■□□ 2.43
COL27A1-208ENST00000494780 LTBP1Q14766 1721 aa30.25■■■□□ 2.43
COL27A1-208ENST00000494780 PRKRIP1Q9H875 184 aaPredicted RBP30.25■■■□□ 2.43
COL27A1-208ENST00000494780 EPS15P42566 896 aa30.24■■■□□ 2.43
COL27A1-208ENST00000494780 DPP8Q6V1X1 898 aaPredicted RBP30.24■■■□□ 2.43
COL27A1-208ENST00000494780 ANKRD13DQ6ZTN6 518 aa30.24■■■□□ 2.43
COL27A1-208ENST00000494780 GRAPQ13588 217 aa30.23■■■□□ 2.43
COL27A1-208ENST00000494780 MPNDQ8N594 471 aa30.23■■■□□ 2.43
COL27A1-208ENST00000494780 GRAPLQ8TC17 118 aaPredicted RBP30.23■■■□□ 2.43
COL27A1-208ENST00000494780 DUSP27Q5VZP5 1158 aa30.22■■■□□ 2.43
COL27A1-208ENST00000494780 USP50Q70EL3 339 aaPredicted RBP30.22■■■□□ 2.43
COL27A1-208ENST00000494780 ISCA1Q9BUE6 129 aa30.22■■■□□ 2.43
COL27A1-208ENST00000494780 HYPKQ9NX55 129 aa30.22■■■□□ 2.43
COL27A1-208ENST00000494780 ZNRF3Q9ULT6 936 aa30.22■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms