RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 CNKSR1Q969H4 720 aa15.33■□□□□ 0.04
MDC1-207ENST00000492462 ZNF428Q96B54 188 aa15.33■□□□□ 0.04
MDC1-207ENST00000492462 NTSR2O95665 410 aa15.32■□□□□ 0.04
MDC1-207ENST00000492462 NPR1P16066 1061 aa15.32■□□□□ 0.04
MDC1-207ENST00000492462 OLFM4Q6UX06 510 aa15.32■□□□□ 0.04
MDC1-207ENST00000492462 C3orf67Q6ZVT6 689 aa15.32■□□□□ 0.04
MDC1-207ENST00000492462 NMRK2Q9NPI5 230 aa15.32■□□□□ 0.04
MDC1-207ENST00000492462 LMNB1P20700 586 aa15.31■□□□□ 0.04
MDC1-207ENST00000492462 CALD1Q05682 793 aaKnown RBP15.31■□□□□ 0.04
MDC1-207ENST00000492462 WWC1Q8IX03 1113 aa15.31■□□□□ 0.04
MDC1-207ENST00000492462 C7orf43Q8WVR3 580 aa15.31■□□□□ 0.04
MDC1-207ENST00000492462 TSR2Q969E8 191 aaKnown RBP15.31■□□□□ 0.04
MDC1-207ENST00000492462 NYXQ9GZU5 481 aa15.31■□□□□ 0.04
MDC1-207ENST00000492462 IBTKQ9P2D0 1353 aaPredicted RBP15.31■□□□□ 0.04
MDC1-207ENST00000492462 TIAM2Q8IVF5 1701 aa15.31■□□□□ 0.04
MDC1-207ENST00000492462 CRY2Q49AN0 593 aa15.3■□□□□ 0.04
MDC1-207ENST00000492462 SLC51AQ86UW1 340 aa15.3■□□□□ 0.04
MDC1-207ENST00000492462 SYNE4Q8N205 404 aa15.3■□□□□ 0.04
MDC1-207ENST00000492462 TSPYL6Q8N831 410 aa15.3■□□□□ 0.04
MDC1-207ENST00000492462 DBF4Q9UBU7 674 aaPredicted RBP15.3■□□□□ 0.04
MDC1-207ENST00000492462 SALL2Q9Y467 1007 aaPredicted RBP15.3■□□□□ 0.04
MDC1-207ENST00000492462 DICER1Q9UPY3 1922 aaKnown RBP15.29■□□□□ 0.04
MDC1-207ENST00000492462 FSTL1Q12841 308 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 TCIRG1Q13488 830 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 CCDC27Q2M243 656 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 PARP10Q53GL7 1025 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 NLRP10Q86W26 655 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 LAMB2P55268 1798 aa15.29■□□□□ 0.04
MDC1-207ENST00000492462 RIC1Q4ADV7 1423 aa15.28■□□□□ 0.04
MDC1-207ENST00000492462 UTP14AQ9BVJ6 771 aaKnown RBP15.28■□□□□ 0.04
MDC1-207ENST00000492462 PHAXQ9H814 394 aaKnown RBP15.28■□□□□ 0.04
MDC1-207ENST00000492462 HSP90AB3PQ58FF7 597 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 ANKRD13DQ6ZTN6 518 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 PPP1R42Q7Z4L9 355 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 C16orf71Q8IYS4 520 aaPredicted RBP15.27■□□□□ 0.04
MDC1-207ENST00000492462 FAM9BQ8IZU0 186 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 PLBD2Q8NHP8 589 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 TAOK3Q9H2K8 898 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 HYPKQ9NX55 129 aa15.27■□□□□ 0.04
MDC1-207ENST00000492462 LTBP3Q9NS15 1303 aa15.26■□□□□ 0.03
MDC1-207ENST00000492462 ATP5J2-PTCD1G3V325 749 aa15.26■□□□□ 0.03
MDC1-207ENST00000492462 TCERG1O14776 1098 aaKnown RBP15.26■□□□□ 0.03
MDC1-207ENST00000492462 HCLS1P14317 486 aaPredicted RBP15.26■□□□□ 0.03
MDC1-207ENST00000492462 SLC10A5Q5PT55 438 aa15.26■□□□□ 0.03
MDC1-207ENST00000492462 TAF1P21675 1872 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 ALDH1B1P30837 517 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 HOXA10P31260 410 aaPredicted RBP15.25■□□□□ 0.03
MDC1-207ENST00000492462 CCDC93Q567U6 631 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 RPGRQ92834 1020 aaKnown RBP15.25■□□□□ 0.03
MDC1-207ENST00000492462 ISCA1Q9BUE6 129 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 RRAGCQ9HB90 399 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 TRMT112Q9UI30 125 aaKnown RBP15.25■□□□□ 0.03
MDC1-207ENST00000492462 SNED1Q8TER0 1413 aa15.25■□□□□ 0.03
MDC1-207ENST00000492462 KDM2BQ8NHM5 1336 aa15.24■□□□□ 0.03
MDC1-207ENST00000492462 DDX60Q8IY21 1712 aaKnown RBP15.24■□□□□ 0.03
MDC1-207ENST00000492462 SOGA3Q5TF21 947 aa15.24■□□□□ 0.03
MDC1-207ENST00000492462 IL16Q14005 1332 aa15.23■□□□□ 0.03
MDC1-207ENST00000492462 ZC3H4Q9UPT8 1303 aaKnown RBP15.23■□□□□ 0.03
MDC1-207ENST00000492462 NCBP3Q53F19 620 aaKnown RBP15.23■□□□□ 0.03
MDC1-207ENST00000492462 NLRP3Q96P20 1036 aa15.23■□□□□ 0.03
MDC1-207ENST00000492462 CRAMP1Q96RY5 1269 aa15.23■□□□□ 0.03
MDC1-207ENST00000492462 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
MDC1-207ENST00000492462 ZNF277Q9NRM2 450 aaPredicted RBP15.23■□□□□ 0.03
MDC1-207ENST00000492462 SH3TC1Q8TE82 1336 aa15.22■□□□□ 0.03
MDC1-207ENST00000492462 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
MDC1-207ENST00000492462 GLTPD2A6NH11 291 aa15.22■□□□□ 0.03
MDC1-207ENST00000492462 FKBP4Q02790 459 aaKnown RBP eCLIP15.22■□□□□ 0.03
MDC1-207ENST00000492462 RTL5Q5HYW3 569 aaPredicted RBP15.22■□□□□ 0.03
MDC1-207ENST00000492462 RIC3Q7Z5B4 369 aa15.22■□□□□ 0.03
MDC1-207ENST00000492462 RBM17Q96I25 401 aaKnown RBP15.22■□□□□ 0.03
MDC1-207ENST00000492462 RNF123Q5XPI4 1314 aa15.21■□□□□ 0.03
MDC1-207ENST00000492462 GOLGA2Q08379 1002 aa15.21■□□□□ 0.03
MDC1-207ENST00000492462 TWISTNBQ3B726 338 aaPredicted RBP15.21■□□□□ 0.03
MDC1-207ENST00000492462 CCDC30Q5VVM6 783 aa15.21■□□□□ 0.03
MDC1-207ENST00000492462 G2E3Q7L622 706 aa15.21■□□□□ 0.03
MDC1-207ENST00000492462 FAM89AQ96GI7 184 aa15.21■□□□□ 0.03
MDC1-207ENST00000492462 ABCC4O15439 1325 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 COL4A1P02462 1669 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 POTECB2RU33 542 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 PPEF1O14829 653 aaPredicted RBP15.2■□□□□ 0.02
MDC1-207ENST00000492462 WDR63Q8IWG1 891 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 RTKN2Q8IZC4 609 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 MYD88Q99836 296 aa15.2■□□□□ 0.02
MDC1-207ENST00000492462 COL4A5P29400 1685 aa15.19■□□□□ 0.02
MDC1-207ENST00000492462 TRIM28Q13263 835 aaKnown RBP15.19■□□□□ 0.02
MDC1-207ENST00000492462 JARID2Q92833 1246 aaPredicted RBP15.19■□□□□ 0.02
MDC1-207ENST00000492462 DDNO94850 711 aaPredicted RBP15.18■□□□□ 0.02
MDC1-207ENST00000492462 MLLT1Q03111 559 aaPredicted RBP15.18■□□□□ 0.02
MDC1-207ENST00000492462 EXOSC9Q06265 439 aaKnown RBP15.18■□□□□ 0.02
MDC1-207ENST00000492462 MAP3K2Q9Y2U5 619 aa15.18■□□□□ 0.02
MDC1-207ENST00000492462 ZNF541Q9H0D2 1346 aa15.17■□□□□ 0.02
MDC1-207ENST00000492462 IARSP41252 1262 aaKnown RBP15.17■□□□□ 0.02
MDC1-207ENST00000492462 CC2D2BQ6DHV5 1058 aa15.17■□□□□ 0.02
MDC1-207ENST00000492462 DPY19L2Q6NUT2 758 aa15.17■□□□□ 0.02
MDC1-207ENST00000492462 PSMD1Q99460 953 aa15.17■□□□□ 0.02
MDC1-207ENST00000492462 METTL22Q9BUU2 404 aaPredicted RBP15.17■□□□□ 0.02
MDC1-207ENST00000492462 ATP6V0A2Q9Y487 856 aa15.17■□□□□ 0.02
MDC1-207ENST00000492462 PI4KAP2A4QPH2 592 aa15.16■□□□□ 0.02
MDC1-207ENST00000492462 IRS4O14654 1257 aaPredicted RBP15.16■□□□□ 0.02
MDC1-207ENST00000492462 VAMP4O75379 141 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms