RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 KCNQ3O43525 872 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 CTCFP49711 727 aaPredicted RBP11.01□□□□□ -0.65
USP39-216ENST00000490193 VEGFBP49765 207 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 ASTLQ6HA08 431 aaPredicted RBP11.01□□□□□ -0.65
USP39-216ENST00000490193 RTKN2Q8IZC4 609 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 WBP1LQ9NX94 342 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 HACL1Q9UJ83 578 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 ZNF541Q9H0D2 1346 aa11.01□□□□□ -0.65
USP39-216ENST00000490193 RASSF10A6NK89 507 aa11□□□□□ -0.65
USP39-216ENST00000490193 SPDYE4A6NLX3 237 aa11□□□□□ -0.65
USP39-216ENST00000490193 FZD9O00144 591 aa11□□□□□ -0.65
USP39-216ENST00000490193 SNRPA1P09661 255 aaKnown RBP11□□□□□ -0.65
USP39-216ENST00000490193 C7P10643 843 aa11□□□□□ -0.65
USP39-216ENST00000490193 EPHX2P34913 555 aa11□□□□□ -0.65
USP39-216ENST00000490193 TPTE2Q6XPS3 522 aa11□□□□□ -0.65
USP39-216ENST00000490193 PNMA8AQ86V59 439 aaPredicted RBP11□□□□□ -0.65
USP39-216ENST00000490193 AIDAQ96BJ3 306 aa11□□□□□ -0.65
USP39-216ENST00000490193 PHACTR3Q96KR7 559 aa11□□□□□ -0.65
USP39-216ENST00000490193 RSPH6AQ9H0K4 717 aa11□□□□□ -0.65
USP39-216ENST00000490193 NUP98P52948 1817 aa11□□□□□ -0.65
USP39-216ENST00000490193 RIC1Q4ADV7 1423 aa11□□□□□ -0.65
USP39-216ENST00000490193 LTBP1Q14766 1721 aa10.99□□□□□ -0.65
USP39-216ENST00000490193 IARSP41252 1262 aaKnown RBP10.99□□□□□ -0.65
USP39-216ENST00000490193 PSMD1Q99460 953 aa10.99□□□□□ -0.65
USP39-216ENST00000490193 ZNF277Q9NRM2 450 aaPredicted RBP10.99□□□□□ -0.65
USP39-216ENST00000490193 KDM3BQ7LBC6 1761 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 TRPM7Q96QT4 1865 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 PRAMEF22A3QJZ6 481 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 NBPF26B4DH59 902 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 ALDH1B1P30837 517 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 PRKAR2BP31323 418 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 PIP4K2AP48426 406 aaPredicted RBP10.98□□□□□ -0.65
USP39-216ENST00000490193 CRY2Q49AN0 593 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 EAPPQ56P03 285 aaPredicted RBP10.98□□□□□ -0.65
USP39-216ENST00000490193 NBPF10Q6P3W6 841 aaKnown RBP10.98□□□□□ -0.65
USP39-216ENST00000490193 GPC2Q8N158 579 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 NBPF15Q8N660 670 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 SLC39A7Q92504 469 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 NIP7Q9Y221 180 aaKnown RBP eCLIP10.98□□□□□ -0.65
USP39-216ENST00000490193 COL4A5P29400 1685 aa10.98□□□□□ -0.65
USP39-216ENST00000490193 DEFB115Q30KQ5 88 aa10.97□□□□□ -0.65
USP39-216ENST00000490193 CC2D2BQ6DHV5 1058 aa10.97□□□□□ -0.65
USP39-216ENST00000490193 OLFM4Q6UX06 510 aa10.97□□□□□ -0.65
USP39-216ENST00000490193 CNTROBQ8N137 903 aa10.97□□□□□ -0.65
USP39-216ENST00000490193 RNF123Q5XPI4 1314 aa10.97□□□□□ -0.65
USP39-216ENST00000490193 DLG5Q8TDM6 1919 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 IBTKQ9P2D0 1353 aaPredicted RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 WDR33Q9C0J8 1336 aaKnown RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 HTATSF1O43719 755 aaKnown RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 HSPA8P11142 646 aaKnown RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 LBX1P52954 281 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 MAP2K1Q02750 393 aaPredicted RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 GRIPAP1Q4V328 841 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 MAP1SQ66K74 1059 aaPredicted RBP10.96□□□□□ -0.65
USP39-216ENST00000490193 MAMSTRQ6ZN01 415 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 SYNE4Q8N205 404 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 CFAP53Q96M91 514 aa10.96□□□□□ -0.65
USP39-216ENST00000490193 ABCC12Q96J65 1359 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 ATMINO43313 823 aaPredicted RBP10.95□□□□□ -0.66
USP39-216ENST00000490193 HOXA10P31260 410 aaPredicted RBP10.95□□□□□ -0.66
USP39-216ENST00000490193 HLFQ16534 295 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 MCM10Q7L590 875 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 JDP2Q8WYK2 163 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 RTF1Q92541 710 aaKnown RBP10.95□□□□□ -0.66
USP39-216ENST00000490193 ABHD8Q96I13 439 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 NYXQ9GZU5 481 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 METRNQ9UJH8 293 aa10.95□□□□□ -0.66
USP39-216ENST00000490193 ERVV-1B6SEH8 477 aa10.94□□□□□ -0.66
USP39-216ENST00000490193 DDX21Q9NR30 783 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP39-216ENST00000490193 NUDCQ9Y266 331 aa10.94□□□□□ -0.66
USP39-216ENST00000490193 GTF2E1P29083 439 aaPredicted RBP10.93□□□□□ -0.66
USP39-216ENST00000490193 SCNN1DP51172 638 aa10.93□□□□□ -0.66
USP39-216ENST00000490193 EIF6P56537 245 aaKnown RBP10.93□□□□□ -0.66
USP39-216ENST00000490193 TAF7Q15545 349 aaPredicted RBP10.93□□□□□ -0.66
USP39-216ENST00000490193 CCER1Q8TC90 406 aaPredicted RBP10.93□□□□□ -0.66
USP39-216ENST00000490193 MAP3K15Q6ZN16 1313 aa10.92□□□□□ -0.66
USP39-216ENST00000490193 FAM177BA6PVY3 158 aa10.92□□□□□ -0.66
USP39-216ENST00000490193 LMOD1P29536 600 aaPredicted RBP10.92□□□□□ -0.66
USP39-216ENST00000490193 USP50Q70EL3 339 aaPredicted RBP10.92□□□□□ -0.66
USP39-216ENST00000490193 CRAMP1Q96RY5 1269 aa10.92□□□□□ -0.66
USP39-216ENST00000490193 ABT1Q9ULW3 272 aaKnown RBP10.92□□□□□ -0.66
USP39-216ENST00000490193 TNRC18O15417 2968 aaPredicted RBP10.92□□□□□ -0.66
USP39-216ENST00000490193 U2AF1L5P0DN76 240 aaPredicted RBP10.91□□□□□ -0.66
USP39-216ENST00000490193 ECE1P42892 770 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 U2AF1Q01081 240 aaKnown RBP eCLIP10.91□□□□□ -0.66
USP39-216ENST00000490193 MLLT1Q03111 559 aaPredicted RBP10.91□□□□□ -0.66
USP39-216ENST00000490193 DCTN1Q14203 1278 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 NUTM1Q86Y26 1132 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 MS4A3Q96HJ5 214 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 CAPNS2Q96L46 248 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 VPS33BQ9H267 617 aa10.91□□□□□ -0.66
USP39-216ENST00000490193 ANKRD36CQ5JPF3 1778 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 UBN2Q6ZU65 1347 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 EPS15P42566 896 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 RGS19P49795 217 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 CST9Q5W186 159 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 LARGE2Q8N3Y3 721 aa10.9□□□□□ -0.66
USP39-216ENST00000490193 PNISRQ8TF01 805 aaKnown RBP10.9□□□□□ -0.66
USP39-216ENST00000490193 RPGRQ92834 1020 aaKnown RBP10.9□□□□□ -0.66
USP39-216ENST00000490193 GJA3Q9Y6H8 435 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms