RNA–Protein interactions for RNA: ENST00000489772.5

GGA1-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 1, human

TSL 2

Gene GGA1, Length 1,384 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GGA1-222	ENST00000489772	STK31	Q9BXU1	1019 aa		14.27	□□□□□ -0.12
GGA1-222	ENST00000489772	DDX58	O95786	925 aa	Known RBP	14.26	□□□□□ -0.13
GGA1-222	ENST00000489772	NLRP10	Q86W26	655 aa		14.26	□□□□□ -0.13
GGA1-222	ENST00000489772	PHAX	Q9H814	394 aa	Known RBP	14.26	□□□□□ -0.13
GGA1-222	ENST00000489772	RNF123	Q5XPI4	1314 aa		14.26	□□□□□ -0.13
GGA1-222	ENST00000489772	ABCC12	Q96J65	1359 aa		14.26	□□□□□ -0.13
GGA1-222	ENST00000489772	C21orf2	O43822	256 aa		14.25	□□□□□ -0.13
GGA1-222	ENST00000489772	CRY2	Q49AN0	593 aa		14.25	□□□□□ -0.13
GGA1-222	ENST00000489772	PRPF40B	Q6NWY9	871 aa	Known RBP	14.25	□□□□□ -0.13
GGA1-222	ENST00000489772	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.25	□□□□□ -0.13
GGA1-222	ENST00000489772	TRMT112	Q9UI30	125 aa	Known RBP	14.25	□□□□□ -0.13
GGA1-222	ENST00000489772	ALDH1B1	P30837	517 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	SLC10A5	Q5PT55	438 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	SOGA3	Q5TF21	947 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	C9orf131	Q5VYM1	1079 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	RPGR	Q92834	1020 aa	Known RBP	14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	NLRP3	Q96P20	1036 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	ADCY9	O60503	1353 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	CHD4	Q14839	1912 aa		14.24	□□□□□ -0.13
GGA1-222	ENST00000489772	ATP5J2-PTCD1	G3V325	749 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	TCERG1	O14776	1098 aa	Known RBP	14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	SLC4A2	P04920	1241 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	EXOSC9	Q06265	439 aa	Known RBP	14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	ISCA1	Q9BUE6	129 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	SH3TC1	Q8TE82	1336 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	ZNF521	Q96K83	1311 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	RIC1	Q4ADV7	1423 aa		14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	BRCA1	P38398	1863 aa	Known RBP	14.23	□□□□□ -0.13
GGA1-222	ENST00000489772	VAMP4	O75379	141 aa		14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	TRIM28	Q13263	835 aa	Known RBP	14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	RBM17	Q96I25	401 aa	Known RBP	14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	RNF181	Q9P0P0	153 aa		14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	ANKRD31	Q8N7Z5	1873 aa		14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	HOXA10	P31260	410 aa	Predicted RBP	14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	RASSF7	Q02833	373 aa		14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	GPBP1L1	Q9HC44	474 aa	Predicted RBP	14.22	□□□□□ -0.13
GGA1-222	ENST00000489772	NUP98	P52948	1817 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772		E9PSI1	815 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	NFKBIE	O00221	500 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	HCLS1	P14317	486 aa	Predicted RBP	14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	LMNB1	P20700	586 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	KSR2	Q6VAB6	950 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	MIER1	Q8N108	512 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	ZNF526	Q8TF50	670 aa	Predicted RBP	14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	C7orf43	Q8WVR3	580 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	MYD88	Q99836	296 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	METTL22	Q9BUU2	404 aa	Predicted RBP	14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	TAOK3	Q9H2K8	898 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	MAP3K2	Q9Y2U5	619 aa		14.21	□□□□□ -0.14
GGA1-222	ENST00000489772	DLEC1	Q9Y238	1755 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	ARFGEF1	Q9Y6D6	1849 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	PI4KAP2	A4QPH2	592 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	CCDC93	Q567U6	631 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	C3orf67	Q6ZVT6	689 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	PI4KAP1	Q8N8J0	262 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	ZNF428	Q96B54	188 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	FAM89A	Q96GI7	184 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	CRAMP1	Q96RY5	1269 aa		14.2	□□□□□ -0.14
GGA1-222	ENST00000489772	COL11A2	P13942	1736 aa	Predicted RBP	14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	NEXN	Q0ZGT2	675 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	FLII	Q13045	1269 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	G2E3	Q7L622	706 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	RTKN2	Q8IZC4	609 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	SYNE4	Q8N205	404 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	CCDC191	Q8NCU4	936 aa		14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	CWC25	Q9NXE8	425 aa	Predicted RBP	14.19	□□□□□ -0.14
GGA1-222	ENST00000489772	LTBP3	Q9NS15	1303 aa		14.18	□□□□□ -0.14
GGA1-222	ENST00000489772	HSP90B1	P14625	803 aa	Known RBP	14.18	□□□□□ -0.14
GGA1-222	ENST00000489772	CC2D2B	Q6DHV5	1058 aa		14.18	□□□□□ -0.14
GGA1-222	ENST00000489772	TMX4	Q9H1E5	349 aa	Predicted RBP	14.18	□□□□□ -0.14
GGA1-222	ENST00000489772	ZC3H4	Q9UPT8	1303 aa	Known RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	PPEF1	O14829	653 aa	Predicted RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	FKBP5	Q13451	457 aa	Predicted RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	RTL5	Q5HYW3	569 aa	Predicted RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	DDX46	Q7L014	1031 aa	Known RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	TNRC6C	Q9HCJ0	1690 aa	Known RBP	14.17	□□□□□ -0.14
GGA1-222	ENST00000489772	IRS4	O14654	1257 aa	Predicted RBP	14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	BBOX1	O75936	387 aa		14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	PRELP	P51888	382 aa		14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	SLFN5	Q08AF3	891 aa		14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	GRIPAP1	Q4V328	841 aa		14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	OLFM4	Q6UX06	510 aa		14.16	□□□□□ -0.14
GGA1-222	ENST00000489772	ABCC4	O15439	1325 aa		14.15	□□□□□ -0.14
GGA1-222	ENST00000489772	KDM2B	Q8NHM5	1336 aa		14.15	□□□□□ -0.14
GGA1-222	ENST00000489772	PCCA	P05165	728 aa	Predicted RBP	14.15	□□□□□ -0.14
GGA1-222	ENST00000489772	FKBP4	Q02790	459 aa	Known RBP eCLIP	14.15	□□□□□ -0.14
GGA1-222	ENST00000489772	IGKV5-2	P06315	115 aa		14.14	□□□□□ -0.15
GGA1-222	ENST00000489772	SF3B3	Q15393	1217 aa	Known RBP	14.14	□□□□□ -0.15
GGA1-222	ENST00000489772	DNAAF4	Q8WXU2	420 aa		14.14	□□□□□ -0.15
GGA1-222	ENST00000489772	ATP6V0A2	Q9Y487	856 aa		14.14	□□□□□ -0.15
GGA1-222	ENST00000489772	SLX4	Q8IY92	1834 aa		14.14	□□□□□ -0.15
GGA1-222	ENST00000489772	GRAP	Q13588	217 aa		14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	GRAPL	Q8TC17	118 aa	Predicted RBP	14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	CDCA7L	Q96GN5	454 aa		14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	PSMD1	Q99460	953 aa		14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	ZNF277	Q9NRM2	450 aa	Predicted RBP	14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	ANKRD36C	Q5JPF3	1778 aa		14.13	□□□□□ -0.15
GGA1-222	ENST00000489772	NEURL1B	A8MQ27	555 aa		14.12	□□□□□ -0.15
GGA1-222	ENST00000489772	CWF19L2	Q2TBE0	894 aa	Known RBP	14.12	□□□□□ -0.15

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms