RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PCCAP05165 728 aaPredicted RBP26.9■■□□□ 1.9
SMC4-221ENST00000489573 HMGB2P26583 209 aaKnown RBP26.9■■□□□ 1.9
SMC4-221ENST00000489573 LNPKQ9C0E8 428 aa26.9■■□□□ 1.9
SMC4-221ENST00000489573 RGL2O15211 777 aa26.89■■□□□ 1.9
SMC4-221ENST00000489573 TXNRD1Q16881 649 aa26.89■■□□□ 1.9
SMC4-221ENST00000489573 EPHA10Q5JZY3 1008 aa26.89■■□□□ 1.9
SMC4-221ENST00000489573 ZBTB38Q8NAP3 1195 aaPredicted RBP26.89■■□□□ 1.9
SMC4-221ENST00000489573 ZBTB47Q9UFB7 747 aaPredicted RBP26.89■■□□□ 1.9
SMC4-221ENST00000489573 EXOC6BQ9Y2D4 811 aa26.89■■□□□ 1.9
SMC4-221ENST00000489573 SCN7AQ01118 1682 aa26.89■■□□□ 1.9
SMC4-221ENST00000489573 APBA3O96018 575 aa26.88■■□□□ 1.89
SMC4-221ENST00000489573 PDE4AP27815 886 aa26.88■■□□□ 1.89
SMC4-221ENST00000489573 RABL6Q3YEC7 729 aaPredicted RBP26.88■■□□□ 1.89
SMC4-221ENST00000489573 TNS1Q9HBL0 1735 aaKnown RBP26.88■■□□□ 1.89
SMC4-221ENST00000489573 UBN2Q6ZU65 1347 aa26.87■■□□□ 1.89
SMC4-221ENST00000489573 RTL5Q5HYW3 569 aaPredicted RBP26.87■■□□□ 1.89
SMC4-221ENST00000489573 CLEC4GQ6UXB4 293 aa26.87■■□□□ 1.89
SMC4-221ENST00000489573 EP400Q96L91 3159 aa26.86■■□□□ 1.89
SMC4-221ENST00000489573 NARFQ9UHQ1 456 aa26.86■■□□□ 1.89
SMC4-221ENST00000489573 SURF6O75683 361 aaKnown RBP26.85■■□□□ 1.89
SMC4-221ENST00000489573 PARP10Q53GL7 1025 aa26.85■■□□□ 1.89
SMC4-221ENST00000489573 CDHR2Q9BYE9 1310 aa26.85■■□□□ 1.89
SMC4-221ENST00000489573 APBB1O00213 710 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 FOXO4P98177 505 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 SMIM5Q71RC9 77 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 PROM2Q8N271 834 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 RAB11FIP3O75154 756 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 HSP90AB4PQ58FF6 505 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 AMIGO3Q86WK7 504 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 FAM89AQ96GI7 184 aa26.84■■□□□ 1.89
SMC4-221ENST00000489573 NOP58Q9Y2X3 529 aaKnown RBP26.84■■□□□ 1.89
SMC4-221ENST00000489573 ADRA2BP18089 450 aa26.83■■□□□ 1.89
SMC4-221ENST00000489573 ARHGEF1Q92888 912 aaKnown RBP26.83■■□□□ 1.89
SMC4-221ENST00000489573 PLA2G12BQ9BX93 195 aa26.83■■□□□ 1.89
SMC4-221ENST00000489573 LRRCC1Q9C099 1032 aa26.83■■□□□ 1.89
SMC4-221ENST00000489573 TRMT112Q9UI30 125 aaKnown RBP26.83■■□□□ 1.89
SMC4-221ENST00000489573 NIP7Q9Y221 180 aaKnown RBP eCLIP26.83■■□□□ 1.891e-7■■■■■ 83.2
SMC4-221ENST00000489573 ZPR1O75312 459 aa26.82■■□□□ 1.88
SMC4-221ENST00000489573 TRAPPC3LQ5T215 181 aa26.82■■□□□ 1.88
SMC4-221ENST00000489573 LMBR1LQ6UX01 489 aa26.82■■□□□ 1.88
SMC4-221ENST00000489573 RGPD3A6NKT7 1758 aaPredicted RBP26.82■■□□□ 1.88
SMC4-221ENST00000489573 RGPD4Q7Z3J3 1758 aa26.82■■□□□ 1.88
SMC4-221ENST00000489573 PHF14O94880 888 aa26.81■■□□□ 1.88
SMC4-221ENST00000489573 USPL1Q5W0Q7 1092 aa26.81■■□□□ 1.88
SMC4-221ENST00000489573 C4AP0C0L4 1744 aa26.81■■□□□ 1.88
SMC4-221ENST00000489573 SMARCA5O60264 1052 aaPredicted RBP26.8■■□□□ 1.88
SMC4-221ENST00000489573 SUSD4Q5VX71 490 aa26.8■■□□□ 1.88
SMC4-221ENST00000489573 BCL2L12Q9HB09 334 aa26.8■■□□□ 1.88
SMC4-221ENST00000489573 SRP68Q9UHB9 627 aaKnown RBP26.8■■□□□ 1.88
SMC4-221ENST00000489573 UBR3Q6ZT12 1888 aa26.8■■□□□ 1.88
SMC4-221ENST00000489573 USP42Q9H9J4 1324 aaKnown RBP26.8■■□□□ 1.88
SMC4-221ENST00000489573 RFC4P35249 363 aa26.8■■□□□ 1.88
SMC4-221ENST00000489573 UTP14AQ9BVJ6 771 aaKnown RBP26.8■■□□□ 1.88
SMC4-221ENST00000489573 PA2G4Q9UQ80 394 aaKnown RBP26.8■■□□□ 1.88
SMC4-221ENST00000489573 SSFA2P28290 1259 aa26.78■■□□□ 1.88
SMC4-221ENST00000489573 RFX5P48382 616 aaPredicted RBP26.78■■□□□ 1.88
SMC4-221ENST00000489573 OS9Q13438 667 aaPredicted RBP26.78■■□□□ 1.88
SMC4-221ENST00000489573 KIF1BPQ96EK5 621 aa26.78■■□□□ 1.88
SMC4-221ENST00000489573 CHMP3Q9Y3E7 222 aa26.78■■□□□ 1.88
SMC4-221ENST00000489573 SH3TC1Q8TE82 1336 aa26.77■■□□□ 1.88
SMC4-221ENST00000489573 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.77■■□□□ 1.88
SMC4-221ENST00000489573 IRS4O14654 1257 aaPredicted RBP26.77■■□□□ 1.88
SMC4-221ENST00000489573 ERC1Q8IUD2 1116 aa26.77■■□□□ 1.88
SMC4-221ENST00000489573 SYNE4Q8N205 404 aa26.77■■□□□ 1.88
SMC4-221ENST00000489573 COPRSQ9NQ92 184 aa26.77■■□□□ 1.88
SMC4-221ENST00000489573 RHPN1Q8TCX5 695 aa26.76■■□□□ 1.87
SMC4-221ENST00000489573 NTSR2O95665 410 aa26.75■■□□□ 1.87
SMC4-221ENST00000489573 TBC1D9BQ66K14 1250 aa26.75■■□□□ 1.87
SMC4-221ENST00000489573 FAM177BA6PVY3 158 aa26.75■■□□□ 1.87
SMC4-221ENST00000489573 G3BP1Q13283 466 aaKnown RBP eCLIP26.75■■□□□ 1.871e-39■■■■■ 140
SMC4-221ENST00000489573 BCL11AQ9H165 835 aa26.75■■□□□ 1.87
SMC4-221ENST00000489573 PDE8AO60658 829 aa26.74■■□□□ 1.87
SMC4-221ENST00000489573 CSF1RP07333 972 aa26.74■■□□□ 1.87
SMC4-221ENST00000489573 PTPN12Q05209 780 aaKnown RBP26.74■■□□□ 1.87
SMC4-221ENST00000489573 C16orf71Q8IYS4 520 aaPredicted RBP26.74■■□□□ 1.87
SMC4-221ENST00000489573 KLHDC4Q8TBB5 520 aa26.74■■□□□ 1.87
SMC4-221ENST00000489573 CTSWP56202 376 aa26.73■■□□□ 1.87
SMC4-221ENST00000489573 PLEKHM2Q8IWE5 1019 aa26.73■■□□□ 1.87
SMC4-221ENST00000489573 HSP90B1P14625 803 aaKnown RBP26.72■■□□□ 1.87
SMC4-221ENST00000489573 BICDL1Q6ZP65 573 aa26.72■■□□□ 1.87
SMC4-221ENST00000489573 AKT1S1Q96B36 256 aa26.72■■□□□ 1.87
SMC4-221ENST00000489573 SIL1Q9H173 461 aa26.72■■□□□ 1.87
SMC4-221ENST00000489573 TSHZ2Q9NRE2 1034 aa26.72■■□□□ 1.87
SMC4-221ENST00000489573 COL24A1Q17RW2 1714 aa26.72■■□□□ 1.87
SMC4-221ENST00000489573 ZNF827Q17R98 1081 aa26.71■■□□□ 1.87
SMC4-221ENST00000489573 OTUD7AQ8TE49 926 aaPredicted RBP26.71■■□□□ 1.87
SMC4-221ENST00000489573 SETDB2Q96T68 719 aa26.71■■□□□ 1.87
SMC4-221ENST00000489573 IL1RAPL2Q9NP60 686 aa26.71■■□□□ 1.87
SMC4-221ENST00000489573 FAM161AQ3B820 660 aa26.71■■□□□ 1.87
SMC4-221ENST00000489573 LAMB2P55268 1798 aa26.7■■□□□ 1.87
SMC4-221ENST00000489573 CCDC57Q2TAC2 916 aa26.7■■□□□ 1.86
SMC4-221ENST00000489573 TTLL11Q8NHH1 800 aa26.7■■□□□ 1.86
SMC4-221ENST00000489573 MYH3P11055 1940 aa26.69■■□□□ 1.86
SMC4-221ENST00000489573 NYXQ9GZU5 481 aa26.69■■□□□ 1.86
SMC4-221ENST00000489573 TFCP2L1Q9NZI6 479 aa26.69■■□□□ 1.86
SMC4-221ENST00000489573 HCLS1P14317 486 aaPredicted RBP26.68■■□□□ 1.86
SMC4-221ENST00000489573 SF3B2Q13435 895 aaKnown RBP26.68■■□□□ 1.86
SMC4-221ENST00000489573 NUTM1Q86Y26 1132 aa26.68■■□□□ 1.86
SMC4-221ENST00000489573 CAMKK2Q96RR4 588 aa26.68■■□□□ 1.86
SMC4-221ENST00000489573 SALL3Q9BXA9 1300 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms