RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 TSR2Q969E8 191 aaKnown RBP11.74□□□□□ -0.53
HDAC6-232ENST00000489053 ABCC12Q96J65 1359 aa11.74□□□□□ -0.53
HDAC6-232ENST00000489053 KLRG2A4D1S0 409 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-232ENST00000489053 NFKBIEO00221 500 aa11.73□□□□□ -0.53
HDAC6-232ENST00000489053 NTSR2O95665 410 aa11.73□□□□□ -0.53
HDAC6-232ENST00000489053 CC2D2BQ6DHV5 1058 aa11.73□□□□□ -0.53
HDAC6-232ENST00000489053 NLRP10Q86W26 655 aa11.73□□□□□ -0.53
HDAC6-232ENST00000489053 SH3TC1Q8TE82 1336 aa11.73□□□□□ -0.53
HDAC6-232ENST00000489053 ARFGEF1Q9Y6D6 1849 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 IL16Q14005 1332 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 ATP5J2-PTCD1G3V325 749 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 TCERG1O14776 1098 aaKnown RBP11.72□□□□□ -0.53
HDAC6-232ENST00000489053 PPEF1O14829 653 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-232ENST00000489053 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 GRIPAP1Q4V328 841 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 DDX46Q7L014 1031 aaKnown RBP11.72□□□□□ -0.53
HDAC6-232ENST00000489053 LRP10Q7Z4F1 713 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 C8orf58Q8NAV2 365 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 JDP2Q8WYK2 163 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 MYH16Q9H6N6 1097 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 NMRK2Q9NPI5 230 aa11.72□□□□□ -0.53
HDAC6-232ENST00000489053 LTBP3Q9NS15 1303 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 TOMM70O94826 608 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 HCLS1P14317 486 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-232ENST00000489053 FKBP4Q02790 459 aaKnown RBP eCLIP11.71□□□□□ -0.53
HDAC6-232ENST00000489053 TWISTNBQ3B726 338 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-232ENST00000489053 CRY2Q49AN0 593 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 NCBP3Q53F19 620 aaKnown RBP11.71□□□□□ -0.53
HDAC6-232ENST00000489053 WDR63Q8IWG1 891 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 ZNF428Q96B54 188 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 RRAGCQ9HB90 399 aa11.71□□□□□ -0.53
HDAC6-232ENST00000489053 BRCA1P38398 1863 aaKnown RBP11.71□□□□□ -0.53
HDAC6-232ENST00000489053 RIC1Q4ADV7 1423 aa11.7□□□□□ -0.54
HDAC6-232ENST00000489053 RTL5Q5HYW3 569 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-232ENST00000489053 CRAMP1Q96RY5 1269 aa11.7□□□□□ -0.54
HDAC6-232ENST00000489053 MYD88Q99836 296 aa11.7□□□□□ -0.54
HDAC6-232ENST00000489053 ZNF277Q9NRM2 450 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-232ENST00000489053 DLEC1Q9Y238 1755 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 GLTPD2A6NH11 291 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 KIF3CO14782 793 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 VEGFAP15692 232 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-232ENST00000489053 HOXA10P31260 410 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-232ENST00000489053 SLC10A5Q5PT55 438 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 SYNE4Q8N205 404 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 PHAXQ9H814 394 aaKnown RBP11.69□□□□□ -0.54
HDAC6-232ENST00000489053 ANKRD31Q8N7Z5 1873 aa11.69□□□□□ -0.54
HDAC6-232ENST00000489053 COL11A2P13942 1736 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-232ENST00000489053 FANCIQ9NVI1 1328 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 BBOX1O75936 387 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 IARSP41252 1262 aaKnown RBP11.68□□□□□ -0.54
HDAC6-232ENST00000489053 TSPYL6Q8N831 410 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 SUPT20HQ8NEM7 779 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 FAM89AQ96GI7 184 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 CWC25Q9NXE8 425 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-232ENST00000489053 MAP3K2Q9Y2U5 619 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 CEP350Q5VT06 3117 aa11.68□□□□□ -0.54
HDAC6-232ENST00000489053 IQCA1LA6NCM1 817 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 IRS4O14654 1257 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-232ENST00000489053 SLC4A2P04920 1241 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 EIF6P56537 245 aaKnown RBP11.67□□□□□ -0.54
HDAC6-232ENST00000489053 OLFM4Q6UX06 510 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 DPP8Q6V1X1 898 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-232ENST00000489053 TMC4Q7Z404 712 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 LARGE2Q8N3Y3 721 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 RBM46Q8TBY0 533 aaKnown RBP11.67□□□□□ -0.54
HDAC6-232ENST00000489053 C7orf43Q8WVR3 580 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 PSMD1Q99460 953 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 ISCA1Q9BUE6 129 aa11.67□□□□□ -0.54
HDAC6-232ENST00000489053 ABCC4O15439 1325 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 NUP98P52948 1817 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 HSPA6P17066 643 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 TRIM28Q13263 835 aaKnown RBP11.66□□□□□ -0.54
HDAC6-232ENST00000489053 FKBP5Q13451 457 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-232ENST00000489053 GRAPQ13588 217 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 KSR2Q6VAB6 950 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 C3orf67Q6ZVT6 689 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 NIM1KQ8IY84 436 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 ZBTB38Q8NAP3 1195 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-232ENST00000489053 CCDC191Q8NCU4 936 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 SMC1BQ8NDV3 1235 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 GRAPLQ8TC17 118 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-232ENST00000489053 METTL22Q9BUU2 404 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-232ENST00000489053 ATP6V0A2Q9Y487 856 aa11.66□□□□□ -0.54
HDAC6-232ENST00000489053 PI4KAP2A4QPH2 592 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 PPIP5K2O43314 1243 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 EXOSC9Q06265 439 aaKnown RBP11.65□□□□□ -0.54
HDAC6-232ENST00000489053 FSTL1Q12841 308 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 CCDC152Q4G0S7 254 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 MPNDQ8N594 471 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 PI4KAP1Q8N8J0 262 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 GJA3Q9Y6H8 435 aa11.65□□□□□ -0.54
HDAC6-232ENST00000489053 SLX4Q8IY92 1834 aa11.65□□□□□ -0.55
HDAC6-232ENST00000489053 DDNO94850 711 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-232ENST00000489053 LMOD1P29536 600 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-232ENST00000489053 APLP1P51693 650 aa11.64□□□□□ -0.55
HDAC6-232ENST00000489053 PRELPP51888 382 aa11.64□□□□□ -0.55
HDAC6-232ENST00000489053 FLIIQ13045 1269 aa11.64□□□□□ -0.55
HDAC6-232ENST00000489053 TNRC6CQ9HCJ0 1690 aaKnown RBP11.64□□□□□ -0.55
HDAC6-232ENST00000489053 G3V3G9 751 aa11.63□□□□□ -0.55
HDAC6-232ENST00000489053 PCCAP05165 728 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms