RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 HMMRO75330 724 aa17.69■□□□□ 0.42
CUX1-209ENST00000487284 UBTFL1P0CB47 393 aaPredicted RBP17.69■□□□□ 0.42
CUX1-209ENST00000487284 ADRA2BP18089 450 aa17.69■□□□□ 0.42
CUX1-209ENST00000487284 SRP68Q9UHB9 627 aaKnown RBP17.69■□□□□ 0.42
CUX1-209ENST00000487284 NARFQ9UHQ1 456 aa17.69■□□□□ 0.42
CUX1-209ENST00000487284 TCIRG1Q13488 830 aa17.68■□□□□ 0.42
CUX1-209ENST00000487284 C8orf34Q49A92 452 aa17.68■□□□□ 0.42
CUX1-209ENST00000487284 NEURL1BA8MQ27 555 aa17.67■□□□□ 0.42
CUX1-209ENST00000487284 RFC4P35249 363 aa17.67■□□□□ 0.42
CUX1-209ENST00000487284 QSER1Q2KHR3 1735 aa17.67■□□□□ 0.42
CUX1-209ENST00000487284 USP42Q9H9J4 1324 aaKnown RBP17.67■□□□□ 0.42
CUX1-209ENST00000487284 SLC15A2Q16348 729 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 HSP90AB3PQ58FF7 597 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 USPL1Q5W0Q7 1092 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 ISCA1Q9BUE6 129 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 LNPKQ9C0E8 428 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 BCL2L12Q9HB09 334 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 LRRFIP2Q9Y608 721 aaKnown RBP17.66■□□□□ 0.42
CUX1-209ENST00000487284 ZPR1O75312 459 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 GPTP24298 496 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 ATP8B2P98198 1209 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 ANKRD45Q5TZF3 282 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 STK32BQ9NY57 414 aa17.66■□□□□ 0.42
CUX1-209ENST00000487284 ZNF652Q9Y2D9 606 aa17.65■□□□□ 0.42
CUX1-209ENST00000487284 UTYO14607 1347 aa17.64■□□□□ 0.42
CUX1-209ENST00000487284 PNPLA7Q6ZV29 1317 aa17.64■□□□□ 0.42
CUX1-209ENST00000487284 NBPF7P0C2Y1 421 aaPredicted RBP17.64■□□□□ 0.41
CUX1-209ENST00000487284 GCKRQ14397 625 aa17.64■□□□□ 0.41
CUX1-209ENST00000487284 CLEC4GQ6UXB4 293 aa17.64■□□□□ 0.41
CUX1-209ENST00000487284 ZNF34Q8IZ26 560 aa17.64■□□□□ 0.41
CUX1-209ENST00000487284 UBN2Q6ZU65 1347 aa17.64■□□□□ 0.41
CUX1-209ENST00000487284 RGL2O15211 777 aa17.63■□□□□ 0.41
CUX1-209ENST00000487284 TRIM28Q13263 835 aaKnown RBP17.63■□□□□ 0.41
CUX1-209ENST00000487284 COL23A1Q86Y22 540 aaPredicted RBP17.63■□□□□ 0.41
CUX1-209ENST00000487284 CCDC191Q8NCU4 936 aa17.63■□□□□ 0.41
CUX1-209ENST00000487284 CWC25Q9NXE8 425 aaPredicted RBP17.63■□□□□ 0.41
CUX1-209ENST00000487284 PNMA6EA0A0J9YXQ4 647 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 GRM8O00222 908 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 NLRP10Q86W26 655 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 FLAD1Q8NFF5 587 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 C9orf78Q9NZ63 289 aaPredicted RBP17.62■□□□□ 0.41
CUX1-209ENST00000487284 HDAC5Q9UQL6 1122 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 NIP7Q9Y221 180 aaKnown RBP eCLIP17.62■□□□□ 0.41
CUX1-209ENST00000487284 SSH3Q8TE77 659 aa17.62■□□□□ 0.41
CUX1-209ENST00000487284 JARID2Q92833 1246 aaPredicted RBP17.62■□□□□ 0.41
CUX1-209ENST00000487284 COL24A1Q17RW2 1714 aa17.61■□□□□ 0.41
CUX1-209ENST00000487284 MSH5O43196 834 aa17.61■□□□□ 0.41
CUX1-209ENST00000487284 GYS1P13807 737 aa17.61■□□□□ 0.41
CUX1-209ENST00000487284 MTX1Q13505 466 aa17.61■□□□□ 0.41
CUX1-209ENST00000487284 TBC1D9BQ66K14 1250 aa17.61■□□□□ 0.41
CUX1-209ENST00000487284 POLA2Q14181 598 aa17.6■□□□□ 0.41
CUX1-209ENST00000487284 BICDL1Q6ZP65 573 aa17.6■□□□□ 0.41
CUX1-209ENST00000487284 RTL5Q5HYW3 569 aaPredicted RBP17.59■□□□□ 0.41
CUX1-209ENST00000487284 UBE3BQ7Z3V4 1068 aa17.59■□□□□ 0.41
CUX1-209ENST00000487284 FAM177BA6PVY3 158 aa17.58■□□□□ 0.41
CUX1-209ENST00000487284 CASP7P55210 303 aa17.58■□□□□ 0.41
CUX1-209ENST00000487284 SUSD4Q5VX71 490 aa17.58■□□□□ 0.41
CUX1-209ENST00000487284 H7C1W4 665 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 PARP10Q53GL7 1025 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 PPP1R42Q7Z4L9 355 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 ZBTB47Q9UFB7 747 aaPredicted RBP17.57■□□□□ 0.4
CUX1-209ENST00000487284 TRMT112Q9UI30 125 aaKnown RBP17.57■□□□□ 0.4
CUX1-209ENST00000487284 PCCAP05165 728 aaPredicted RBP17.57■□□□□ 0.4
CUX1-209ENST00000487284 NFIXQ14938 502 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 BMP2KLQ5H9B9 411 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 FAM89AQ96GI7 184 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 SUCLG2Q96I99 432 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 SETDB2Q96T68 719 aa17.57■□□□□ 0.4
CUX1-209ENST00000487284 PDGFDQ9GZP0 370 aaPredicted RBP17.57■□□□□ 0.4
CUX1-209ENST00000487284 NTSR2O95665 410 aa17.56■□□□□ 0.4
CUX1-209ENST00000487284 SYNE4Q8N205 404 aa17.56■□□□□ 0.4
CUX1-209ENST00000487284 ZBTB38Q8NAP3 1195 aaPredicted RBP17.56■□□□□ 0.4
CUX1-209ENST00000487284 KAZALD1Q96I82 304 aa17.56■□□□□ 0.4
CUX1-209ENST00000487284 EXOC6BQ9Y2D4 811 aa17.56■□□□□ 0.4
CUX1-209ENST00000487284 SRGAP3O43295 1099 aa17.55■□□□□ 0.4
CUX1-209ENST00000487284 PLEKHM2Q8IWE5 1019 aa17.55■□□□□ 0.4
CUX1-209ENST00000487284 UTP14AQ9BVJ6 771 aaKnown RBP17.55■□□□□ 0.4
CUX1-209ENST00000487284 AK9Q5TCS8 1911 aa17.55■□□□□ 0.4
CUX1-209ENST00000487284 LAMB2P55268 1798 aa17.54■□□□□ 0.4
CUX1-209ENST00000487284 DDX60Q8IY21 1712 aaKnown RBP17.54■□□□□ 0.4
CUX1-209ENST00000487284 CARMIL3Q8ND23 1372 aa17.54■□□□□ 0.4
CUX1-209ENST00000487284 LRRCC1Q9C099 1032 aa17.54■□□□□ 0.4
CUX1-209ENST00000487284 SH3TC1Q8TE82 1336 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 CDHR2Q9BYE9 1310 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 SMARCA5O60264 1052 aaPredicted RBP17.53■□□□□ 0.4
CUX1-209ENST00000487284 TM4SF1P30408 202 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 EPHA10Q5JZY3 1008 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 MSL1Q68DK7 614 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 NUTM1Q86Y26 1132 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 NLGN1Q8N2Q7 840 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 BICC1Q9H694 974 aaKnown RBP17.53■□□□□ 0.4
CUX1-209ENST00000487284 MYH3P11055 1940 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 APBB1O00213 710 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 RAB11FIP3O75154 756 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 ANP32AP39687 249 aaKnown RBP17.53■□□□□ 0.4
CUX1-209ENST00000487284 DDR1Q08345 913 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 CASZ1Q86V15 1759 aa17.53■□□□□ 0.4
CUX1-209ENST00000487284 IRS4O14654 1257 aaPredicted RBP17.52■□□□□ 0.39
CUX1-209ENST00000487284 R3HDM1Q15032 1099 aaKnown RBP17.52■□□□□ 0.39
CUX1-209ENST00000487284 NBPF5PQ86XG9 351 aaPredicted RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms