RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 ABCC3O15438 1527 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 BABAM1Q9NWV8 329 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 SLAIN2Q9P270 581 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 TSPOAP1O95153 1857 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 USP19O94966 1318 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 HAND2P61296 217 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 NBPF14Q5TI25 921 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 PIBF1Q8WXW3 757 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 GDPD2Q9HCC8 539 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 PRR36Q9H6K5 1346 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 CCT2P78371 535 aaKnown RBP12.9□□□□□ -0.34
HDAC6-228ENST00000486227 GUCY1B3Q02153 619 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 NBPF5PQ86XG9 351 aaPredicted RBP12.9□□□□□ -0.34
HDAC6-228ENST00000486227 SPC24Q8NBT2 197 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 TMX3Q96JJ7 454 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 TCEANC2Q96MN5 208 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 HMGB1P09429 215 aaKnown RBP12.9□□□□□ -0.34
HDAC6-228ENST00000486227 PDIA4P13667 645 aaKnown RBP12.9□□□□□ -0.34
HDAC6-228ENST00000486227 TRMT2AQ8IZ69 625 aaKnown RBP12.9□□□□□ -0.34
HDAC6-228ENST00000486227 IL17REQ8NFR9 667 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 PLEKHG1Q9ULL1 1385 aa12.9□□□□□ -0.34
HDAC6-228ENST00000486227 ZNF622Q969S3 477 aaKnown RBP eCLIP12.9□□□□□ -0.343e-6■□□□□ 9.3
HDAC6-228ENST00000486227 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.35
HDAC6-228ENST00000486227 MNS1Q8NEH6 495 aa12.9□□□□□ -0.35
HDAC6-228ENST00000486227 NUP62CLQ9H1M0 184 aa12.9□□□□□ -0.35
HDAC6-228ENST00000486227 ZNF521Q96K83 1311 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 CCDC82Q8N4S0 544 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 PRIMPOLQ96LW4 560 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 BICC1Q9H694 974 aaKnown RBP12.89□□□□□ -0.35
HDAC6-228ENST00000486227 SYNMO15061 1565 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 ST5P78524 1137 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 CBX1P83916 185 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 CDCA7Q9BWT1 371 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-228ENST00000486227 ARHGEF10O15013 1369 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 PPFIA3O75145 1194 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 HOXB7P09629 217 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 IL15P40933 162 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-228ENST00000486227 NEK1Q96PY6 1258 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 TET3O43151 1660 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 ARAP3Q8WWN8 1544 aa12.89□□□□□ -0.35
HDAC6-228ENST00000486227 RBM8AQ9Y5S9 174 aaKnown RBP12.88□□□□□ -0.35
HDAC6-228ENST00000486227 SMC2O95347 1197 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 IPO7O95373 1038 aaKnown RBP12.88□□□□□ -0.35
HDAC6-228ENST00000486227 ATP2B3Q16720 1220 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 ZSCAN23Q3MJ62 389 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 PCDH11XQ9BZA7 1347 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 PCDH11YQ9BZA8 1340 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 KIF1BO60333 1816 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 WDHD1O75717 1129 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-228ENST00000486227 DZIP1Q86YF9 867 aaKnown RBP12.88□□□□□ -0.35
HDAC6-228ENST00000486227 ZNF287Q9HBT7 754 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 ZKSCAN5Q9Y2L8 839 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 GJB2P29033 226 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 EIF4A1P60842 406 aaKnown RBP12.88□□□□□ -0.35
HDAC6-228ENST00000486227 RAB3GAP1Q15042 981 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 PDILTQ8N807 584 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
HDAC6-228ENST00000486227 KCNQ3O43525 872 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 NBPF7P0C2Y1 421 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-228ENST00000486227 PNMA6EA0A0J9YXQ4 647 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 CAMK4Q16566 473 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 NECAB1Q8N987 351 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 FAM135BQ49AJ0 1406 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 STX6O43752 255 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 TXLNAP40222 546 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 ZNF496Q96IT1 587 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-228ENST00000486227 TFIP11Q9UBB9 837 aaKnown RBP12.87□□□□□ -0.35
HDAC6-228ENST00000486227 CHMLP26374 656 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 USP5P45974 858 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 SLF2Q8IX21 1173 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 CRACR2BQ8N4Y2 399 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-228ENST00000486227 C8orf76Q96K31 380 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 SLC52A2Q9HAB3 445 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 TFCP2L1Q9NZI6 479 aa12.87□□□□□ -0.35
HDAC6-228ENST00000486227 ZHX1Q9UKY1 873 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-228ENST00000486227 AATKQ6ZMQ8 1374 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 TTC41PQ6P2S7 1318 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 GOLGA8BA8MQT2 603 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 RANBP6O60518 1105 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 SCAND2PQ9GZW5 306 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 SHROOM2Q13796 1616 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 TFCP2Q12800 502 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 NMIQ13287 307 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 TTF1Q15361 905 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 LRRC2Q9BYS8 371 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 CWC15Q9P013 229 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 HMG20BQ9P0W2 317 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 IQSEC3Q9UPP2 1182 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 CLTCL1P53675 1640 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 IFIT3O14879 490 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 ANAPC15P60006 121 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 SOGA3Q5TF21 947 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 NOC3LQ8WTT2 800 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 ARHGAP31Q2M1Z3 1444 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 KIAA0232Q92628 1395 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 CCDC152Q4G0S7 254 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 NOM1Q5C9Z4 860 aaKnown RBP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 RAB11FIP4Q86YS3 637 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms