RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 JMYQ8N9B5 988 aa21.89■■□□□ 1.09
VIM-205ENST00000485947 UBN2Q6ZU65 1347 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 GRIPAP1Q4V328 841 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 SLC10A5Q5PT55 438 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 TRMT2AQ8IZ69 625 aaKnown RBP21.88■■□□□ 1.09
VIM-205ENST00000485947 XAGE3Q8WTP9 111 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 C7orf43Q8WVR3 580 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 CDCA7LQ96GN5 454 aa21.88■■□□□ 1.09
VIM-205ENST00000485947 COL11A2P13942 1736 aaPredicted RBP21.88■■□□□ 1.09
VIM-205ENST00000485947 FAM177BA6PVY3 158 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 NTSR2O95665 410 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 GPTP24298 496 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 HOXA10P31260 410 aaPredicted RBP21.87■■□□□ 1.09
VIM-205ENST00000485947 RASSF7Q02833 373 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 KRT24Q2M2I5 525 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 SUSD4Q5VX71 490 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 CC2D2BQ6DHV5 1058 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 KLRG1Q96E93 195 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 UTP14AQ9BVJ6 771 aaKnown RBP21.87■■□□□ 1.09
VIM-205ENST00000485947 TAOK3Q9H2K8 898 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 CHPF2Q9P2E5 772 aa21.87■■□□□ 1.09
VIM-205ENST00000485947 SBF1O95248 1867 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 TCIRG1Q13488 830 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 ERFEQ4G0M1 354 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 CCDC93Q567U6 631 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 RTKN2Q8IZC4 609 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 PLBD2Q8NHP8 589 aa21.86■■□□□ 1.09
VIM-205ENST00000485947 ARFGEF2Q9Y6D5 1785 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 CAPN15O75808 1086 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 ANXA1P04083 346 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 PRELPP51888 382 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 ANKRD13DQ6ZTN6 518 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 NUTM1Q86Y26 1132 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 NECTIN2Q92692 538 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 MYH16Q9H6N6 1097 aa21.85■■□□□ 1.09
VIM-205ENST00000485947 AIMP1Q12904 312 aaKnown RBP21.84■■□□□ 1.09
VIM-205ENST00000485947 RPGRQ92834 1020 aaKnown RBP21.84■■□□□ 1.09
VIM-205ENST00000485947 NLRP3Q96P20 1036 aa21.84■■□□□ 1.09
VIM-205ENST00000485947 CRAMP1Q96RY5 1269 aa21.84■■□□□ 1.09
VIM-205ENST00000485947 ABCC12Q96J65 1359 aa21.84■■□□□ 1.09
VIM-205ENST00000485947 GLTPD2A6NH11 291 aa21.83■■□□□ 1.09
VIM-205ENST00000485947 DPY19L2Q6NUT2 758 aa21.83■■□□□ 1.09
VIM-205ENST00000485947 NMRK2Q9NPI5 230 aa21.83■■□□□ 1.09
VIM-205ENST00000485947 HTRA3P83110 453 aa21.82■■□□□ 1.08
VIM-205ENST00000485947 NLRP10Q86W26 655 aa21.82■■□□□ 1.08
VIM-205ENST00000485947 RBM17Q96I25 401 aaKnown RBP21.82■■□□□ 1.08
VIM-205ENST00000485947 SPINK5Q9NQ38 1064 aaPredicted RBP21.82■■□□□ 1.08
VIM-205ENST00000485947 SLX4Q8IY92 1834 aa21.82■■□□□ 1.08
VIM-205ENST00000485947 FER1L6Q2WGJ9 1857 aa21.81■■□□□ 1.08
VIM-205ENST00000485947 TRIM28Q13263 835 aaKnown RBP21.81■■□□□ 1.08
VIM-205ENST00000485947 CCDC30Q5VVM6 783 aa21.81■■□□□ 1.08
VIM-205ENST00000485947 TNS4Q8IZW8 715 aa21.81■■□□□ 1.08
VIM-205ENST00000485947 RBM46Q8TBY0 533 aaKnown RBP21.81■■□□□ 1.08
VIM-205ENST00000485947 ZNF219Q9P2Y4 722 aaPredicted RBP21.81■■□□□ 1.08
VIM-205ENST00000485947 FKBP4Q02790 459 aaKnown RBP eCLIP21.8■■□□□ 1.08
VIM-205ENST00000485947 C16orf71Q8IYS4 520 aaPredicted RBP21.8■■□□□ 1.08
VIM-205ENST00000485947 SH3TC1Q8TE82 1336 aa21.8■■□□□ 1.08
VIM-205ENST00000485947 C8orf58Q8NAV2 365 aa21.78■■□□□ 1.08
VIM-205ENST00000485947 PSMD1Q99460 953 aa21.78■■□□□ 1.08
VIM-205ENST00000485947 ISCA1Q9BUE6 129 aa21.78■■□□□ 1.08
VIM-205ENST00000485947 TRMT112Q9UI30 125 aaKnown RBP21.78■■□□□ 1.08
VIM-205ENST00000485947 HSP90B1P14625 803 aaKnown RBP21.77■■□□□ 1.08
VIM-205ENST00000485947 VEGFAP15692 232 aaPredicted RBP21.77■■□□□ 1.08
VIM-205ENST00000485947 TMX4Q9H1E5 349 aaPredicted RBP21.77■■□□□ 1.08
VIM-205ENST00000485947 FANCIQ9NVI1 1328 aa21.77■■□□□ 1.07
VIM-205ENST00000485947 DDX58O95786 925 aaKnown RBP21.76■■□□□ 1.07
VIM-205ENST00000485947 FSTL1Q12841 308 aa21.76■■□□□ 1.07
VIM-205ENST00000485947 TNRC6CQ9HCJ0 1690 aaKnown RBP21.75■■□□□ 1.07
VIM-205ENST00000485947 ANKRD36CQ5JPF3 1778 aa21.75■■□□□ 1.07
VIM-205ENST00000485947 ELL2O00472 640 aaPredicted RBP21.75■■□□□ 1.07
VIM-205ENST00000485947 BBOX1O75936 387 aa21.75■■□□□ 1.07
VIM-205ENST00000485947 RIC3Q7Z5B4 369 aa21.75■■□□□ 1.07
VIM-205ENST00000485947 RRAGCQ9HB90 399 aa21.75■■□□□ 1.07
VIM-205ENST00000485947 CT47B1P0C2W7 299 aaPredicted RBP21.74■■□□□ 1.07
VIM-205ENST00000485947 TMC4Q7Z404 712 aa21.74■■□□□ 1.07
VIM-205ENST00000485947 VPS33BQ9H267 617 aa21.74■■□□□ 1.07
VIM-205ENST00000485947 DICER1Q9UPY3 1922 aaKnown RBP21.74■■□□□ 1.07
VIM-205ENST00000485947 STK31Q9BXU1 1019 aa21.73■■□□□ 1.07
VIM-205ENST00000485947 SNED1Q8TER0 1413 aa21.72■■□□□ 1.07
VIM-205ENST00000485947 PPEF1O14829 653 aaPredicted RBP21.72■■□□□ 1.07
VIM-205ENST00000485947 RCAN3Q9UKA8 241 aa21.72■■□□□ 1.07
VIM-205ENST00000485947 ATP6V0A2Q9Y487 856 aa21.72■■□□□ 1.07
VIM-205ENST00000485947 IARSP41252 1262 aaKnown RBP21.71■■□□□ 1.07
VIM-205ENST00000485947 TWISTNBQ3B726 338 aaPredicted RBP21.71■■□□□ 1.07
VIM-205ENST00000485947 DDX46Q7L014 1031 aaKnown RBP21.71■■□□□ 1.07
VIM-205ENST00000485947 SYNE4Q8N205 404 aa21.71■■□□□ 1.07
VIM-205ENST00000485947 CCDC191Q8NCU4 936 aa21.71■■□□□ 1.07
VIM-205ENST00000485947 TSR2Q969E8 191 aaKnown RBP21.71■■□□□ 1.07
VIM-205ENST00000485947 PHAXQ9H814 394 aaKnown RBP21.71■■□□□ 1.07
VIM-205ENST00000485947 TIAM2Q8IVF5 1701 aa21.71■■□□□ 1.07
VIM-205ENST00000485947 CCDC88AQ3V6T2 1871 aa21.71■■□□□ 1.07
VIM-205ENST00000485947 HCLS1P14317 486 aaPredicted RBP21.7■■□□□ 1.06
VIM-205ENST00000485947 SF3B3Q15393 1217 aaKnown RBP21.7■■□□□ 1.06
VIM-205ENST00000485947 C3orf67Q6ZVT6 689 aa21.7■■□□□ 1.06
VIM-205ENST00000485947 TSPYL6Q8N831 410 aa21.7■■□□□ 1.06
VIM-205ENST00000485947 SMC1BQ8NDV3 1235 aa21.7■■□□□ 1.06
VIM-205ENST00000485947 CACNA1SQ13698 1873 aa21.69■■□□□ 1.06
VIM-205ENST00000485947 SP8Q8IXZ3 490 aa21.69■■□□□ 1.06
VIM-205ENST00000485947 ZBTB38Q8NAP3 1195 aaPredicted RBP21.69■■□□□ 1.06
VIM-205ENST00000485947 SUPT20HQ8NEM7 779 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms