RNA–Protein interactions for RNA: ENST00000485275.2

LRIF1-202, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRIF1, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-202ENST00000485275 NARFQ9UHQ1 456 aa18.24■□□□□ 0.51
LRIF1-202ENST00000485275 USP42Q9H9J4 1324 aaKnown RBP18.23■□□□□ 0.51
LRIF1-202ENST00000485275 H7C1W4 665 aa18.23■□□□□ 0.51
LRIF1-202ENST00000485275 RTL5Q5HYW3 569 aaPredicted RBP18.23■□□□□ 0.51
LRIF1-202ENST00000485275 USPL1Q5W0Q7 1092 aa18.23■□□□□ 0.51
LRIF1-202ENST00000485275 CENPQQ7L2Z9 268 aaPredicted RBP18.23■□□□□ 0.51
LRIF1-202ENST00000485275 ANO8Q9HCE9 1232 aaPredicted RBP18.23■□□□□ 0.51
LRIF1-202ENST00000485275 HSP90AB3PQ58FF7 597 aa18.22■□□□□ 0.51
LRIF1-202ENST00000485275 SYNE4Q8N205 404 aa18.22■□□□□ 0.51
LRIF1-202ENST00000485275 RPAP2Q8IXW5 612 aaPredicted RBP18.22■□□□□ 0.51
LRIF1-202ENST00000485275 BICC1Q9H694 974 aaKnown RBP18.22■□□□□ 0.51
LRIF1-202ENST00000485275 DDX60Q8IY21 1712 aaKnown RBP18.22■□□□□ 0.51
LRIF1-202ENST00000485275 SSFA2P28290 1259 aa18.21■□□□□ 0.51
LRIF1-202ENST00000485275 LAMB2P55268 1798 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 CASZ1Q86V15 1759 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 ADRA2BP18089 450 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 TRAPPC3LQ5T215 181 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 TBC1D9BQ66K14 1250 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 FAM89AQ96GI7 184 aa18.2■□□□□ 0.5
LRIF1-202ENST00000485275 RWDD1Q9H446 243 aaPredicted RBP18.2■□□□□ 0.5
LRIF1-202ENST00000485275 SUSD4Q5VX71 490 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 CLEC4GQ6UXB4 293 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 SMC5Q8IY18 1101 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 NIP7Q9Y221 180 aaKnown RBP eCLIP18.19■□□□□ 0.5
LRIF1-202ENST00000485275 QSER1Q2KHR3 1735 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 ATP8B2P98198 1209 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 MTX1Q13505 466 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 PPP1R42Q7Z4L9 355 aa18.19■□□□□ 0.5
LRIF1-202ENST00000485275 PCCAP05165 728 aaPredicted RBP18.18■□□□□ 0.5
LRIF1-202ENST00000485275 RFC4P35249 363 aa18.18■□□□□ 0.5
LRIF1-202ENST00000485275 FOXO4P98177 505 aa18.18■□□□□ 0.5
LRIF1-202ENST00000485275 POLA2Q14181 598 aa18.18■□□□□ 0.5
LRIF1-202ENST00000485275 ZBTB38Q8NAP3 1195 aaPredicted RBP18.18■□□□□ 0.5
LRIF1-202ENST00000485275 ZNF652Q9Y2D9 606 aa18.18■□□□□ 0.5
LRIF1-202ENST00000485275 MYH3P11055 1940 aa18.18■□□□□ 0.5
LRIF1-202ENST00000485275 RGL2O15211 777 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 ZPR1O75312 459 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 NTSR2O95665 410 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 BAG6P46379 1132 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 RABL6Q3YEC7 729 aaPredicted RBP18.17■□□□□ 0.5
LRIF1-202ENST00000485275 SSH3Q8TE77 659 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 PNPLA7Q6ZV29 1317 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 FAM177BA6PVY3 158 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 COL23A1Q86Y22 540 aaPredicted RBP18.17■□□□□ 0.5
LRIF1-202ENST00000485275 TFCP2L1Q9NZI6 479 aa18.17■□□□□ 0.5
LRIF1-202ENST00000485275 SRGAP3O43295 1099 aa18.16■□□□□ 0.5
LRIF1-202ENST00000485275 GYS1P13807 737 aa18.16■□□□□ 0.5
LRIF1-202ENST00000485275 SF3B2Q13435 895 aaKnown RBP18.16■□□□□ 0.5
LRIF1-202ENST00000485275 BICDL1Q6ZP65 573 aa18.16■□□□□ 0.5
LRIF1-202ENST00000485275 DCTPP1Q9H773 170 aa18.16■□□□□ 0.5
LRIF1-202ENST00000485275 CDHR2Q9BYE9 1310 aa18.16■□□□□ 0.5
LRIF1-202ENST00000485275 TRMT112Q9UI30 125 aaKnown RBP18.15■□□□□ 0.5
LRIF1-202ENST00000485275 PARP10Q53GL7 1025 aa18.14■□□□□ 0.5
LRIF1-202ENST00000485275 TNRC6CQ9HCJ0 1690 aaKnown RBP18.14■□□□□ 0.49
LRIF1-202ENST00000485275 NUTM1Q86Y26 1132 aa18.14■□□□□ 0.49
LRIF1-202ENST00000485275 PDZRN3Q9UPQ7 1066 aa18.14■□□□□ 0.49
LRIF1-202ENST00000485275 ABCC12Q96J65 1359 aa18.14■□□□□ 0.49
LRIF1-202ENST00000485275 COL4A1P02462 1669 aa18.14■□□□□ 0.49
LRIF1-202ENST00000485275 RFX5P48382 616 aaPredicted RBP18.13■□□□□ 0.49
LRIF1-202ENST00000485275 NFIXQ14938 502 aa18.13■□□□□ 0.49
LRIF1-202ENST00000485275 SLC15A2Q16348 729 aa18.13■□□□□ 0.49
LRIF1-202ENST00000485275 LMBR1LQ6UX01 489 aa18.13■□□□□ 0.49
LRIF1-202ENST00000485275 PLA2G12BQ9BX93 195 aa18.13■□□□□ 0.49
LRIF1-202ENST00000485275 EXOC6BQ9Y2D4 811 aa18.13■□□□□ 0.49
LRIF1-202ENST00000485275 HMMRO75330 724 aa18.12■□□□□ 0.49
LRIF1-202ENST00000485275 KLHDC4Q8TBB5 520 aa18.12■□□□□ 0.49
LRIF1-202ENST00000485275 UTP14AQ9BVJ6 771 aaKnown RBP18.12■□□□□ 0.49
LRIF1-202ENST00000485275 PA2G4Q9UQ80 394 aaKnown RBP18.12■□□□□ 0.49
LRIF1-202ENST00000485275 SH3TC1Q8TE82 1336 aa18.12■□□□□ 0.49
LRIF1-202ENST00000485275 IRS4O14654 1257 aaPredicted RBP18.12■□□□□ 0.49
LRIF1-202ENST00000485275 GCC1Q96CN9 775 aa18.12■□□□□ 0.49
LRIF1-202ENST00000485275 NUCB1Q02818 461 aa18.11■□□□□ 0.49
LRIF1-202ENST00000485275 CCDC125Q86Z20 511 aa18.11■□□□□ 0.49
LRIF1-202ENST00000485275 HDAC5Q9UQL6 1122 aa18.11■□□□□ 0.49
LRIF1-202ENST00000485275 HCLS1P14317 486 aaPredicted RBP18.1■□□□□ 0.49
LRIF1-202ENST00000485275 PDE4AP27815 886 aa18.1■□□□□ 0.49
LRIF1-202ENST00000485275 ERFEQ4G0M1 354 aa18.1■□□□□ 0.49
LRIF1-202ENST00000485275 UPF1Q92900 1129 aaKnown RBP eCLIP18.1■□□□□ 0.49
LRIF1-202ENST00000485275 PDGFDQ9GZP0 370 aaPredicted RBP18.1■□□□□ 0.49
LRIF1-202ENST00000485275 CARMIL3Q8ND23 1372 aa18.1■□□□□ 0.49
LRIF1-202ENST00000485275 HMGB2P26583 209 aaKnown RBP18.09■□□□□ 0.49
LRIF1-202ENST00000485275 DDR1Q08345 913 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 FAM161AQ3B820 660 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 C3orf67Q6ZVT6 689 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 CCDC85AQ96PX6 553 aaPredicted RBP18.09■□□□□ 0.49
LRIF1-202ENST00000485275 SETDB2Q96T68 719 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 LRP5O75197 1615 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 NRXN2Q9P2S2 1712 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 APBB1O00213 710 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 CSF1RP07333 972 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 TM4SF1P30408 202 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 CTSWP56202 376 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 CCDC24Q8N4L8 307 aa18.09■□□□□ 0.49
LRIF1-202ENST00000485275 SMARCA5O60264 1052 aaPredicted RBP18.08■□□□□ 0.48
LRIF1-202ENST00000485275 PTPN12Q05209 780 aaKnown RBP18.08■□□□□ 0.48
LRIF1-202ENST00000485275 TTLL11Q8NHH1 800 aa18.08■□□□□ 0.48
LRIF1-202ENST00000485275 LNPKQ9C0E8 428 aa18.08■□□□□ 0.48
LRIF1-202ENST00000485275 STK32BQ9NY57 414 aa18.08■□□□□ 0.48
LRIF1-202ENST00000485275 NOP58Q9Y2X3 529 aaKnown RBP18.08■□□□□ 0.48
LRIF1-202ENST00000485275 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms