RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 MCM10Q7L590 875 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 NBPF15Q8N660 670 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 NUDCQ9Y266 331 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 LTBP1Q14766 1721 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 RPGRQ92834 1020 aaKnown RBP21.48■■□□□ 1.03
DDX56-210ENST00000479440 CAPNS2Q96L46 248 aa21.48■■□□□ 1.03
DDX56-210ENST00000479440 IBTKQ9P2D0 1353 aaPredicted RBP21.48■■□□□ 1.03
DDX56-210ENST00000479440 COL4A5P29400 1685 aa21.47■■□□□ 1.03
DDX56-210ENST00000479440 HLFQ16534 295 aa21.47■■□□□ 1.03
DDX56-210ENST00000479440 LARGE2Q8N3Y3 721 aa21.47■■□□□ 1.03
DDX56-210ENST00000479440 SCNN1DP51172 638 aa21.46■■□□□ 1.03
DDX56-210ENST00000479440 USP50Q70EL3 339 aaPredicted RBP21.46■■□□□ 1.03
DDX56-210ENST00000479440 ERVV-1B6SEH8 477 aa21.44■■□□□ 1.02
DDX56-210ENST00000479440 HTATSF1O43719 755 aaKnown RBP21.44■■□□□ 1.02
DDX56-210ENST00000479440 GRM1Q13255 1194 aa21.44■■□□□ 1.02
DDX56-210ENST00000479440 CYP4F22Q6NT55 531 aa21.44■■□□□ 1.02
DDX56-210ENST00000479440 NUTM1Q86Y26 1132 aa21.44■■□□□ 1.02
DDX56-210ENST00000479440 NIM1KQ8IY84 436 aa21.44■■□□□ 1.02
DDX56-210ENST00000479440 CCER1Q8TC90 406 aaPredicted RBP21.44■■□□□ 1.02
DDX56-210ENST00000479440 PPEF1O14829 653 aaPredicted RBP21.43■■□□□ 1.02
DDX56-210ENST00000479440 U2AF1L5P0DN76 240 aaPredicted RBP21.43■■□□□ 1.02
DDX56-210ENST00000479440 EPS15P42566 896 aa21.43■■□□□ 1.02
DDX56-210ENST00000479440 U2AF1Q01081 240 aaKnown RBP eCLIP21.43■■□□□ 1.02
DDX56-210ENST00000479440 KIF6Q6ZMV9 814 aa21.43■■□□□ 1.02
DDX56-210ENST00000479440 GPR101Q96P66 508 aaPredicted RBP21.43■■□□□ 1.02
DDX56-210ENST00000479440 TLL2Q9Y6L7 1015 aa21.43■■□□□ 1.02
DDX56-210ENST00000479440 MAP3K15Q6ZN16 1313 aa21.43■■□□□ 1.02
DDX56-210ENST00000479440 CCDC85CA6NKD9 419 aa21.42■■□□□ 1.02
DDX56-210ENST00000479440 HOXA10P31260 410 aaPredicted RBP21.42■■□□□ 1.02
DDX56-210ENST00000479440 MLLT1Q03111 559 aaPredicted RBP21.42■■□□□ 1.02
DDX56-210ENST00000479440 RBM17Q96I25 401 aaKnown RBP21.42■■□□□ 1.02
DDX56-210ENST00000479440 TRPM7Q96QT4 1865 aa21.42■■□□□ 1.02
DDX56-210ENST00000479440 DCTN1Q14203 1278 aa21.41■■□□□ 1.02
DDX56-210ENST00000479440 TAF7Q15545 349 aaPredicted RBP21.41■■□□□ 1.02
DDX56-210ENST00000479440 TMX4Q9H1E5 349 aaPredicted RBP21.41■■□□□ 1.02
DDX56-210ENST00000479440 ADARB2Q9NS39 739 aaKnown RBP21.41■■□□□ 1.02
DDX56-210ENST00000479440 CA12O43570 354 aa21.4■■□□□ 1.02
DDX56-210ENST00000479440 MAP2K2P36507 400 aa21.4■■□□□ 1.02
DDX56-210ENST00000479440 NGEFQ8N5V2 710 aa21.4■■□□□ 1.02
DDX56-210ENST00000479440 CRAMP1Q96RY5 1269 aa21.4■■□□□ 1.02
DDX56-210ENST00000479440 TRAF5O00463 557 aa21.39■■□□□ 1.01
DDX56-210ENST00000479440 PPIP5K2O43314 1243 aa21.39■■□□□ 1.01
DDX56-210ENST00000479440 FMR1Q06787 632 aaKnown RBP eCLIP21.39■■□□□ 1.01
DDX56-210ENST00000479440 PNISRQ8TF01 805 aaKnown RBP21.39■■□□□ 1.01
DDX56-210ENST00000479440 KDM3BQ7LBC6 1761 aa21.38■■□□□ 1.01
DDX56-210ENST00000479440 UBN2Q6ZU65 1347 aa21.38■■□□□ 1.01
DDX56-210ENST00000479440 CST9Q5W186 159 aa21.38■■□□□ 1.01
DDX56-210ENST00000479440 VPS33BQ9H267 617 aa21.38■■□□□ 1.01
DDX56-210ENST00000479440 NUP98P52948 1817 aa21.38■■□□□ 1.01
DDX56-210ENST00000479440 GPTP24298 496 aa21.37■■□□□ 1.01
DDX56-210ENST00000479440 RGS19P49795 217 aa21.37■■□□□ 1.01
DDX56-210ENST00000479440 GPRC5DQ9NZD1 345 aa21.37■■□□□ 1.01
DDX56-210ENST00000479440 CDHR2Q9BYE9 1310 aa21.36■■□□□ 1.01
DDX56-210ENST00000479440 AOC3Q16853 763 aa21.36■■□□□ 1.01
DDX56-210ENST00000479440 SUPT20HQ8NEM7 779 aa21.36■■□□□ 1.01
DDX56-210ENST00000479440 HHIPL1Q96JK4 782 aa21.36■■□□□ 1.01
DDX56-210ENST00000479440 ZBTB3Q9H5J0 574 aa21.36■■□□□ 1.01
DDX56-210ENST00000479440 TCERG1O14776 1098 aaKnown RBP21.35■■□□□ 1.01
DDX56-210ENST00000479440 CELF2O95319 508 aaKnown RBP21.35■■□□□ 1.01
DDX56-210ENST00000479440 NTSR2O95665 410 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 NEFMP07197 916 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 SUSD4Q5VX71 490 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 PPP1R42Q7Z4L9 355 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 SAPCD2Q86UD0 394 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 TSKSQ9UJT2 592 aa21.35■■□□□ 1.01
DDX56-210ENST00000479440 AOC2O75106 756 aa21.34■■□□□ 1.01
DDX56-210ENST00000479440 MYL6BP14649 208 aa21.34■■□□□ 1.01
DDX56-210ENST00000479440 BRPF1P55201 1214 aaPredicted RBP21.34■■□□□ 1.01
DDX56-210ENST00000479440 TTLL7Q6ZT98 887 aa21.34■■□□□ 1.01
DDX56-210ENST00000479440 RRP7AQ9Y3A4 280 aaKnown RBP21.34■■□□□ 1.01
DDX56-210ENST00000479440 PARP10Q53GL7 1025 aa21.33■■□□□ 1.01
DDX56-210ENST00000479440 CFAP44Q96MT7 982 aa21.33■■□□□ 1.01
DDX56-210ENST00000479440 NLRP3Q96P20 1036 aa21.33■■□□□ 1.01
DDX56-210ENST00000479440 MIS18AQ9NYP9 233 aa21.33■■□□□ 1.01
DDX56-210ENST00000479440 ZNRF3Q9ULT6 936 aa21.33■■□□□ 1.01
DDX56-210ENST00000479440 ERBB4Q15303 1308 aa21.32■■□□□ 1
DDX56-210ENST00000479440 GIGYF2Q6Y7W6 1299 aaKnown RBP21.32■■□□□ 1
DDX56-210ENST00000479440 ZNF34Q8IZ26 560 aa21.32■■□□□ 1
DDX56-210ENST00000479440 MCOLN1Q9GZU1 580 aa21.32■■□□□ 1
DDX56-210ENST00000479440 ATP6V0A2Q9Y487 856 aa21.32■■□□□ 1
DDX56-210ENST00000479440 PPP2R1AP30153 589 aa21.31■■□□□ 1
DDX56-210ENST00000479440 SLC51AQ86UW1 340 aa21.31■■□□□ 1
DDX56-210ENST00000479440 ABCC4O15439 1325 aa21.3■■□□□ 1
DDX56-210ENST00000479440 GMPSP49915 693 aaPredicted RBP21.3■■□□□ 1
DDX56-210ENST00000479440 EIF4A1P60842 406 aaKnown RBP21.3■■□□□ 1
DDX56-210ENST00000479440 CXCL9Q07325 125 aa21.3■■□□□ 1
DDX56-210ENST00000479440 ZC3H15Q8WU90 426 aaKnown RBP21.3■■□□□ 1
DDX56-210ENST00000479440 RTFDC1Q9BY42 306 aaPredicted RBP21.3■■□□□ 1
DDX56-210ENST00000479440 ZNF408Q9H9D4 720 aa21.3■■□□□ 1
DDX56-210ENST00000479440 CIAPIN1Q6FI81 312 aa21.29■■□□□ 1
DDX56-210ENST00000479440 DPP8Q6V1X1 898 aaPredicted RBP21.29■■□□□ 1
DDX56-210ENST00000479440 C3orf67Q6ZVT6 689 aa21.29■■□□□ 1
DDX56-210ENST00000479440 BCL2L13Q9BXK5 485 aa21.29■■□□□ 1
DDX56-210ENST00000479440 GLIS2Q9BZE0 524 aaPredicted RBP21.29■■□□□ 1
DDX56-210ENST00000479440 UTP14AQ9BVJ6 771 aaKnown RBP21.28■■□□□ 1
DDX56-210ENST00000479440 PGAP2Q9UHJ9 254 aa21.28■■□□□ 1
DDX56-210ENST00000479440 KIAA2012Q0VF49 1180 aa21.27■■□□□ 1
DDX56-210ENST00000479440 TNIP1Q15025 636 aa21.27■■□□□ 1
DDX56-210ENST00000479440 CDC37L1Q7L3B6 337 aa21.27■■□□□ 1
DDX56-210ENST00000479440 PCDH10Q9P2E7 1040 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms