RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CRY2Q49AN0 593 aa22.93■■□□□ 1.26
VIM-204ENST00000478746 GPR101Q96P66 508 aaPredicted RBP22.93■■□□□ 1.26
VIM-204ENST00000478746 GRM1Q13255 1194 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 DCTN1Q14203 1278 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 GRIPAP1Q4V328 841 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 NUTM1Q86Y26 1132 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 LARGE2Q8N3Y3 721 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 NGEFQ8N5V2 710 aa22.92■■□□□ 1.26
VIM-204ENST00000478746 RPGRQ92834 1020 aaKnown RBP22.92■■□□□ 1.26
VIM-204ENST00000478746 CCDC85CA6NKD9 419 aa22.91■■□□□ 1.26
VIM-204ENST00000478746 TAF7Q15545 349 aaPredicted RBP22.91■■□□□ 1.26
VIM-204ENST00000478746 CYP4F22Q6NT55 531 aa22.91■■□□□ 1.26
VIM-204ENST00000478746 CCER1Q8TC90 406 aaPredicted RBP22.91■■□□□ 1.26
VIM-204ENST00000478746 SNED1Q8TER0 1413 aa22.91■■□□□ 1.26
VIM-204ENST00000478746 HTATSF1O43719 755 aaKnown RBP22.9■■□□□ 1.26
VIM-204ENST00000478746 U2AF1L5P0DN76 240 aaPredicted RBP22.9■■□□□ 1.26
VIM-204ENST00000478746 SCNN1DP51172 638 aa22.9■■□□□ 1.26
VIM-204ENST00000478746 U2AF1Q01081 240 aaKnown RBP eCLIP22.9■■□□□ 1.26
VIM-204ENST00000478746 CST9Q5W186 159 aa22.9■■□□□ 1.26
VIM-204ENST00000478746 USP50Q70EL3 339 aaPredicted RBP22.9■■□□□ 1.26
VIM-204ENST00000478746 ERVV-1B6SEH8 477 aa22.89■■□□□ 1.25
VIM-204ENST00000478746 HOXA10P31260 410 aaPredicted RBP22.89■■□□□ 1.25
VIM-204ENST00000478746 TRAF5O00463 557 aa22.88■■□□□ 1.25
VIM-204ENST00000478746 MLLT1Q03111 559 aaPredicted RBP22.88■■□□□ 1.25
VIM-204ENST00000478746 MIS18AQ9NYP9 233 aa22.88■■□□□ 1.25
VIM-204ENST00000478746 ABCC12Q96J65 1359 aa22.88■■□□□ 1.25
VIM-204ENST00000478746 TCERG1O14776 1098 aaKnown RBP22.87■■□□□ 1.25
VIM-204ENST00000478746 RBM17Q96I25 401 aaKnown RBP22.87■■□□□ 1.25
VIM-204ENST00000478746 TLL2Q9Y6L7 1015 aa22.87■■□□□ 1.25
VIM-204ENST00000478746 COL4A5P29400 1685 aa22.87■■□□□ 1.25
VIM-204ENST00000478746 MAP3K15Q6ZN16 1313 aa22.86■■□□□ 1.25
VIM-204ENST00000478746 LTBP1Q14766 1721 aa22.86■■□□□ 1.25
VIM-204ENST00000478746 MAP2K2P36507 400 aa22.86■■□□□ 1.25
VIM-204ENST00000478746 NIM1KQ8IY84 436 aa22.86■■□□□ 1.25
VIM-204ENST00000478746 CRAMP1Q96RY5 1269 aa22.86■■□□□ 1.25
VIM-204ENST00000478746 RRP7AQ9Y3A4 280 aaKnown RBP22.86■■□□□ 1.25
VIM-204ENST00000478746 GPTP24298 496 aa22.85■■□□□ 1.25
VIM-204ENST00000478746 RGS19P49795 217 aa22.85■■□□□ 1.25
VIM-204ENST00000478746 KIF6Q6ZMV9 814 aa22.85■■□□□ 1.25
VIM-204ENST00000478746 TRPM7Q96QT4 1865 aa22.85■■□□□ 1.25
VIM-204ENST00000478746 PPEF1O14829 653 aaPredicted RBP22.84■■□□□ 1.25
VIM-204ENST00000478746 TMX4Q9H1E5 349 aaPredicted RBP22.84■■□□□ 1.25
VIM-204ENST00000478746 ADARB2Q9NS39 739 aaKnown RBP22.84■■□□□ 1.25
VIM-204ENST00000478746 TSKSQ9UJT2 592 aa22.84■■□□□ 1.25
VIM-204ENST00000478746 NUP98P52948 1817 aa22.83■■□□□ 1.25
VIM-204ENST00000478746 PPIP5K2O43314 1243 aa22.83■■□□□ 1.25
VIM-204ENST00000478746 AOC2O75106 756 aa22.83■■□□□ 1.25
VIM-204ENST00000478746 SUSD4Q5VX71 490 aa22.83■■□□□ 1.25
VIM-204ENST00000478746 TTLL7Q6ZT98 887 aa22.83■■□□□ 1.25
VIM-204ENST00000478746 GPRC5DQ9NZD1 345 aa22.82■■□□□ 1.24
VIM-204ENST00000478746 MYL6BP14649 208 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 SLC51AQ86UW1 340 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 PNISRQ8TF01 805 aaKnown RBP22.81■■□□□ 1.24
VIM-204ENST00000478746 VPS33BQ9H267 617 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 ZBTB3Q9H5J0 574 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 THSD7BQ9C0I4 1608 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 RIC1Q4ADV7 1423 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 UBN2Q6ZU65 1347 aa22.81■■□□□ 1.24
VIM-204ENST00000478746 CELF2O95319 508 aaKnown RBP22.8■■□□□ 1.24
VIM-204ENST00000478746 AOC3Q16853 763 aa22.8■■□□□ 1.24
VIM-204ENST00000478746 SAPCD2Q86UD0 394 aa22.8■■□□□ 1.24
VIM-204ENST00000478746 ZNF34Q8IZ26 560 aa22.8■■□□□ 1.24
VIM-204ENST00000478746 IBTKQ9P2D0 1353 aaPredicted RBP22.79■■□□□ 1.24
VIM-204ENST00000478746 CA12O43570 354 aa22.79■■□□□ 1.24
VIM-204ENST00000478746 CXCL9Q07325 125 aa22.79■■□□□ 1.24
VIM-204ENST00000478746 PPP1R42Q7Z4L9 355 aa22.79■■□□□ 1.24
VIM-204ENST00000478746 NLRP3Q96P20 1036 aa22.79■■□□□ 1.24
VIM-204ENST00000478746 ZNRF3Q9ULT6 936 aa22.79■■□□□ 1.24
VIM-204ENST00000478746 NTSR2O95665 410 aa22.78■■□□□ 1.24
VIM-204ENST00000478746 PPP2R1AP30153 589 aa22.78■■□□□ 1.24
VIM-204ENST00000478746 C3orf67Q6ZVT6 689 aa22.78■■□□□ 1.24
VIM-204ENST00000478746 CFAP44Q96MT7 982 aa22.78■■□□□ 1.24
VIM-204ENST00000478746 ATP6V0A2Q9Y487 856 aa22.78■■□□□ 1.24
VIM-204ENST00000478746 EIF4A1P60842 406 aaKnown RBP22.77■■□□□ 1.24
VIM-204ENST00000478746 GIGYF2Q6Y7W6 1299 aaKnown RBP22.77■■□□□ 1.24
VIM-204ENST00000478746 SUPT20HQ8NEM7 779 aa22.77■■□□□ 1.24
VIM-204ENST00000478746 HHIPL1Q96JK4 782 aa22.77■■□□□ 1.24
VIM-204ENST00000478746 LAMB4A4D0S4 1761 aa22.76■■□□□ 1.23
VIM-204ENST00000478746 NEFMP07197 916 aa22.76■■□□□ 1.23
VIM-204ENST00000478746 GMPSP49915 693 aaPredicted RBP22.76■■□□□ 1.23
VIM-204ENST00000478746 GLIS2Q9BZE0 524 aaPredicted RBP22.76■■□□□ 1.23
VIM-204ENST00000478746 MCOLN1Q9GZU1 580 aa22.76■■□□□ 1.23
VIM-204ENST00000478746 PGAP2Q9UHJ9 254 aa22.76■■□□□ 1.23
VIM-204ENST00000478746 BRPF1P55201 1214 aaPredicted RBP22.75■■□□□ 1.23
VIM-204ENST00000478746 CASP8AP2Q9UKL3 1982 aa22.74■■□□□ 1.23
VIM-204ENST00000478746 PARP10Q53GL7 1025 aa22.74■■□□□ 1.23
VIM-204ENST00000478746 CIAPIN1Q6FI81 312 aa22.74■■□□□ 1.23
VIM-204ENST00000478746 ZC3H15Q8WU90 426 aaKnown RBP22.74■■□□□ 1.23
VIM-204ENST00000478746 BCL2L13Q9BXK5 485 aa22.74■■□□□ 1.23
VIM-204ENST00000478746 RTFDC1Q9BY42 306 aaPredicted RBP22.74■■□□□ 1.23
VIM-204ENST00000478746 ZNF408Q9H9D4 720 aa22.74■■□□□ 1.23
VIM-204ENST00000478746 SLC10A5Q5PT55 438 aa22.73■■□□□ 1.23
VIM-204ENST00000478746 DPP8Q6V1X1 898 aaPredicted RBP22.73■■□□□ 1.23
VIM-204ENST00000478746 UTP14AQ9BVJ6 771 aaKnown RBP22.73■■□□□ 1.23
VIM-204ENST00000478746 BBOX1O75936 387 aa22.72■■□□□ 1.23
VIM-204ENST00000478746 TNIP1Q15025 636 aa22.72■■□□□ 1.23
VIM-204ENST00000478746 CDC37L1Q7L3B6 337 aa22.72■■□□□ 1.23
VIM-204ENST00000478746 RAD17O75943 681 aa22.71■■□□□ 1.23
VIM-204ENST00000478746 HIRAP54198 1017 aaPredicted RBP22.71■■□□□ 1.23
VIM-204ENST00000478746 DGKZQ13574 1117 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms