RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 RECKO95980 971 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 SSR1P43307 286 aaKnown RBP7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 MTMR3Q13615 1198 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 SH3BP5LQ7L8J4 393 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 FAM177A1Q8N128 213 aaPredicted RBP7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 NANOS1Q8WY41 292 aaKnown RBP7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 C8orf37Q96NL8 207 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 BSDC1Q9NW68 430 aaPredicted RBP7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 DCTN4Q9UJW0 460 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 SH3BP1Q9Y3L3 701 aa7.45□□□□□ -1.22
ECHDC1-215ENST00000475319 PLEKHD1A6NEE1 506 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 ARHGAP4P98171 946 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 SATB1Q01826 763 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 PSME1Q06323 249 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 CAPN12Q6ZSI9 719 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 BEND7Q8N7W2 519 aaPredicted RBP7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 HINFPQ9BQA5 517 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 CARD14Q9BXL6 1004 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 ISY1Q9ULR0 285 aaKnown RBP7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 PCDHGA11Q9Y5H2 935 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 SYNJ1O43426 1573 aa7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 POLA1P09884 1462 aaPredicted RBP7.44□□□□□ -1.22
ECHDC1-215ENST00000475319 DYNC1I1O14576 645 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 WDR4P57081 412 aaKnown RBP7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 LMOD3Q0VAK6 560 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 KIAA1211Q6ZU35 1233 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 OTUD6BQ8N6M0 293 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 SREK1Q8WXA9 508 aaKnown RBP7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 DRC1Q96MC2 740 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 KRTAP4-7Q9BYR0 210 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 MAGI1Q96QZ7 1491 aaPredicted RBP7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 CHD1O14646 1710 aa7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 TDRD9Q8NDG6 1382 aaKnown RBP7.43□□□□□ -1.22
ECHDC1-215ENST00000475319 MAGEB6P1A0A0J9YX57 407 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 FURINP09958 794 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 RNFT1Q5M7Z0 435 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 PODNQ7Z5L7 613 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 ZSCAN29Q8IWY8 852 aaPredicted RBP7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 GOLGA2P5Q9HBQ8 144 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 TERF2IPQ9NYB0 399 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 GRIN2BQ13224 1484 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 TARBP1Q13395 1621 aaKnown RBP7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 CCDC66A2RUB6 948 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 ADH1CP00326 375 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 MAP2K1Q02750 393 aaPredicted RBP7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 FKBP4Q02790 459 aaKnown RBP eCLIP7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 NNTQ13423 1086 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 TSNAXIP1Q2TAA8 658 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 HSP90AB4PQ58FF6 505 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 NBPF10Q6P3W6 841 aaKnown RBP7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 NGEFQ8N5V2 710 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 UNC93B1Q9H1C4 597 aa7.42□□□□□ -1.22
ECHDC1-215ENST00000475319 UPP2O95045 317 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 TIMP2P16035 220 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 WEE1P30291 646 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 ZC3H6P61129 1189 aaKnown RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 SF3B2Q13435 895 aaKnown RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 FKBP5Q13451 457 aaPredicted RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 EAPPQ56P03 285 aaPredicted RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 C6orf118Q5T5N4 469 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 NBPF6Q5VWK0 638 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 PTCRAQ6ISU1 281 aaPredicted RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 NBPF5PQ86XG9 351 aaPredicted RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.41□□□□□ -1.225e-7■■■□□ 18.9
ECHDC1-215ENST00000475319 TSEN2Q8NCE0 465 aaKnown RBP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 NBPF4Q96M43 638 aa7.41□□□□□ -1.22
ECHDC1-215ENST00000475319 SNAPC4Q5SXM2 1469 aa7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 OFD1O75665 1012 aa7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 RIPK4P57078 832 aa7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 ZKSCAN8Q15776 578 aaPredicted RBP7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 SH3RF1Q7Z6J0 888 aa7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 GAS2L2Q8NHY3 880 aa7.4□□□□□ -1.22
ECHDC1-215ENST00000475319 ZBED9Q6R2W3 1325 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 FGD5Q6ZNL6 1462 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 RAD54L2Q9Y4B4 1467 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 GOLIM4O00461 696 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 NRDCO43847 1150 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 CALRP27797 417 aaKnown RBP7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 COL19A1Q14993 1142 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 RNF20Q5VTR2 975 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 CTR9Q6PD62 1173 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 RGL4Q8IZJ4 473 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 MYCBPQ99417 103 aaPredicted RBP7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 FAM13BQ9NYF5 915 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 CEP83Q9Y592 693 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 SYNJ2O15056 1496 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 ARAP1Q96P48 1450 aa7.39□□□□□ -1.23
ECHDC1-215ENST00000475319 WRNQ14191 1432 aaPredicted RBP eCLIP7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 ZNF500O60304 480 aaPredicted RBP7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 USP4Q13107 963 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 NAA30Q147X3 362 aaPredicted RBP7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 ERFEQ4G0M1 354 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 NAALADL2Q58DX5 795 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 LYPD4Q6UWN0 246 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 CCDC125Q86Z20 511 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 CGNQ9P2M7 1197 aaKnown RBP7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 PCDHB11Q9Y5F2 797 aa7.38□□□□□ -1.23
ECHDC1-215ENST00000475319 CNTNAP5Q8WYK1 1306 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms