RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 MAP1SQ66K74 1059 aaPredicted RBP16.77■□□□□ 0.28
SKA3-206ENST00000475251 NBPF10Q6P3W6 841 aaKnown RBP16.77■□□□□ 0.28
SKA3-206ENST00000475251 NBPF15Q8N660 670 aa16.77■□□□□ 0.28
SKA3-206ENST00000475251 ABT1Q9ULW3 272 aaKnown RBP16.77■□□□□ 0.28
SKA3-206ENST00000475251 LBX1P52954 281 aa16.76■□□□□ 0.27
SKA3-206ENST00000475251 CRY2Q49AN0 593 aa16.76■□□□□ 0.27
SKA3-206ENST00000475251 OLFM4Q6UX06 510 aa16.76■□□□□ 0.27
SKA3-206ENST00000475251 RPGRQ92834 1020 aaKnown RBP16.76■□□□□ 0.27
SKA3-206ENST00000475251 LAMB4A4D0S4 1761 aa16.76■□□□□ 0.27
SKA3-206ENST00000475251 WDR33Q9C0J8 1336 aaKnown RBP16.75■□□□□ 0.27
SKA3-206ENST00000475251 ERVV-1B6SEH8 477 aa16.75■□□□□ 0.27
SKA3-206ENST00000475251 NEFMP07197 916 aa16.75■□□□□ 0.27
SKA3-206ENST00000475251 TAF7Q15545 349 aaPredicted RBP16.75■□□□□ 0.27
SKA3-206ENST00000475251 IBTKQ9P2D0 1353 aaPredicted RBP16.75■□□□□ 0.27
SKA3-206ENST00000475251 RIC1Q4ADV7 1423 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 ECE1P42892 770 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 HLFQ16534 295 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 KIF6Q6ZMV9 814 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 PNISRQ8TF01 805 aaKnown RBP16.74■□□□□ 0.27
SKA3-206ENST00000475251 BEGAINQ9BUH8 593 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 DDX21Q9NR30 783 aaKnown RBP eCLIP16.74■□□□□ 0.27
SKA3-206ENST00000475251 GJA3Q9Y6H8 435 aa16.74■□□□□ 0.27
SKA3-206ENST00000475251 SNED1Q8TER0 1413 aa16.73■□□□□ 0.27
SKA3-206ENST00000475251 TMX4Q9H1E5 349 aaPredicted RBP16.73■□□□□ 0.27
SKA3-206ENST00000475251 MAP3K15Q6ZN16 1313 aa16.72■□□□□ 0.27
SKA3-206ENST00000475251 HSPA8P11142 646 aaKnown RBP16.72■□□□□ 0.27
SKA3-206ENST00000475251 HOXA10P31260 410 aaPredicted RBP16.72■□□□□ 0.27
SKA3-206ENST00000475251 DCTN1Q14203 1278 aa16.72■□□□□ 0.27
SKA3-206ENST00000475251 USP50Q70EL3 339 aaPredicted RBP16.72■□□□□ 0.27
SKA3-206ENST00000475251 LARGE2Q8N3Y3 721 aa16.72■□□□□ 0.27
SKA3-206ENST00000475251 ABCC12Q96J65 1359 aa16.72■□□□□ 0.27
SKA3-206ENST00000475251 NUTM1Q86Y26 1132 aa16.71■□□□□ 0.27
SKA3-206ENST00000475251 RBM17Q96I25 401 aaKnown RBP16.71■□□□□ 0.27
SKA3-206ENST00000475251 PPP2R1AP30153 589 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
SKA3-206ENST00000475251 NIM1KQ8IY84 436 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 NGEFQ8N5V2 710 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 ABHD8Q96I13 439 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 CRAMP1Q96RY5 1269 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 NUP98P52948 1817 aa16.7■□□□□ 0.26
SKA3-206ENST00000475251 PPEF1O14829 653 aaPredicted RBP16.69■□□□□ 0.26
SKA3-206ENST00000475251 SCNN1DP51172 638 aa16.69■□□□□ 0.26
SKA3-206ENST00000475251 CAPNS2Q96L46 248 aa16.69■□□□□ 0.26
SKA3-206ENST00000475251 VPS33BQ9H267 617 aa16.69■□□□□ 0.26
SKA3-206ENST00000475251 THSD7BQ9C0I4 1608 aa16.69■□□□□ 0.26
SKA3-206ENST00000475251 PPP1R42Q7Z4L9 355 aa16.68■□□□□ 0.26
SKA3-206ENST00000475251 RRP7AQ9Y3A4 280 aaKnown RBP16.68■□□□□ 0.26
SKA3-206ENST00000475251 KDM3BQ7LBC6 1761 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 EPS15P42566 896 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 SUPT20HQ8NEM7 779 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 GPR101Q96P66 508 aaPredicted RBP16.67■□□□□ 0.26
SKA3-206ENST00000475251 MIS18AQ9NYP9 233 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 LTBP1Q14766 1721 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 ERBB4Q15303 1308 aa16.67■□□□□ 0.26
SKA3-206ENST00000475251 PPIP5K2O43314 1243 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 GPTP24298 496 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 PARP10Q53GL7 1025 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 NLRP3Q96P20 1036 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 TRPM7Q96QT4 1865 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 ZBTB3Q9H5J0 574 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 ADARB2Q9NS39 739 aaKnown RBP16.66■□□□□ 0.26
SKA3-206ENST00000475251 UBN2Q6ZU65 1347 aa16.66■□□□□ 0.26
SKA3-206ENST00000475251 COL4A5P29400 1685 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 MYL6BP14649 208 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 MAP2K2P36507 400 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 EIF4A1P60842 406 aaKnown RBP16.65■□□□□ 0.26
SKA3-206ENST00000475251 GRM1Q13255 1194 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 SUSD4Q5VX71 490 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 GIGYF2Q6Y7W6 1299 aaKnown RBP16.65■□□□□ 0.26
SKA3-206ENST00000475251 TTLL7Q6ZT98 887 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 ZNF34Q8IZ26 560 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 TLL2Q9Y6L7 1015 aa16.65■□□□□ 0.26
SKA3-206ENST00000475251 CA12O43570 354 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 NTSR2O95665 410 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 CYP4F22Q6NT55 531 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
SKA3-206ENST00000475251 GPRC5DQ9NZD1 345 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 ATP6V0A2Q9Y487 856 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 CDHR2Q9BYE9 1310 aa16.64■□□□□ 0.25
SKA3-206ENST00000475251 TCERG1O14776 1098 aaKnown RBP16.63■□□□□ 0.25
SKA3-206ENST00000475251 CST9Q5W186 159 aa16.63■□□□□ 0.25
SKA3-206ENST00000475251 HHIPL1Q96JK4 782 aa16.63■□□□□ 0.25
SKA3-206ENST00000475251 ZNRF3Q9ULT6 936 aa16.63■□□□□ 0.25
SKA3-206ENST00000475251 AOC3Q16853 763 aa16.62■□□□□ 0.25
SKA3-206ENST00000475251 FAM161AQ3B820 660 aa16.62■□□□□ 0.25
SKA3-206ENST00000475251 UTP14AQ9BVJ6 771 aaKnown RBP16.62■□□□□ 0.25
SKA3-206ENST00000475251 DLG5Q8TDM6 1919 aa16.62■□□□□ 0.25
SKA3-206ENST00000475251 CCDC85CA6NKD9 419 aa16.61■□□□□ 0.25
SKA3-206ENST00000475251 TRAF5O00463 557 aa16.61■□□□□ 0.25
SKA3-206ENST00000475251 ZC3H15Q8WU90 426 aaKnown RBP16.61■□□□□ 0.25
SKA3-206ENST00000475251 RTFDC1Q9BY42 306 aaPredicted RBP16.61■□□□□ 0.25
SKA3-206ENST00000475251 MAPK8IP3Q9UPT6 1336 aa16.61■□□□□ 0.25
SKA3-206ENST00000475251 BBOX1O75936 387 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 CELF2O95319 508 aaKnown RBP16.6■□□□□ 0.25
SKA3-206ENST00000475251 MLLT1Q03111 559 aaPredicted RBP16.6■□□□□ 0.25
SKA3-206ENST00000475251 FMR1Q06787 632 aaKnown RBP eCLIP16.6■□□□□ 0.25
SKA3-206ENST00000475251 CXCL9Q07325 125 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 TNIP1Q15025 636 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 NFE2L2Q16236 605 aa16.6■□□□□ 0.25
SKA3-206ENST00000475251 HSP90AB3PQ58FF7 597 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms