RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF296Q8WUU4 475 aaPredicted RBP11.15□□□□□ -0.62
USP54-211ENST00000474929 ZNF652Q9Y2D9 606 aa11.15□□□□□ -0.62
USP54-211ENST00000474929 CCDC24Q8N4L8 307 aa11.14□□□□□ -0.63
USP54-211ENST00000474929 CSRNP1Q96S65 589 aa11.14□□□□□ -0.63
USP54-211ENST00000474929 TEX13AQ9BXU3 409 aaPredicted RBP11.14□□□□□ -0.63
USP54-211ENST00000474929 SLC52A2Q9HAB3 445 aa11.14□□□□□ -0.63
USP54-211ENST00000474929 MKI67P46013 3256 aaKnown RBP11.13□□□□□ -0.63
USP54-211ENST00000474929 A0A0C4DFX4 3053 aa11.13□□□□□ -0.63
USP54-211ENST00000474929 SZT2Q5T011 3432 aa11.13□□□□□ -0.63
USP54-211ENST00000474929 RGL2O15211 777 aa11.13□□□□□ -0.63
USP54-211ENST00000474929 IL6STP40189 918 aaPredicted RBP11.13□□□□□ -0.63
USP54-211ENST00000474929 EIF4A2Q14240 407 aaKnown RBP11.13□□□□□ -0.63
USP54-211ENST00000474929 TMX4Q9H1E5 349 aaPredicted RBP11.13□□□□□ -0.63
USP54-211ENST00000474929 UBR2Q8IWV8 1755 aa11.13□□□□□ -0.63
USP54-211ENST00000474929 CEP290O15078 2479 aa11.12□□□□□ -0.63
USP54-211ENST00000474929 COL4A5P29400 1685 aa11.12□□□□□ -0.63
USP54-211ENST00000474929 CLEC4GQ6UXB4 293 aa11.12□□□□□ -0.63
USP54-211ENST00000474929 TPTE2Q6XPS3 522 aa11.12□□□□□ -0.63
USP54-211ENST00000474929 NPC1L1Q9UHC9 1359 aa11.12□□□□□ -0.63
USP54-211ENST00000474929 FKBP1BP68106 108 aa11.11□□□□□ -0.63
USP54-211ENST00000474929 TNIP1Q15025 636 aa11.11□□□□□ -0.63
USP54-211ENST00000474929 TTC5Q8N0Z6 440 aa11.11□□□□□ -0.63
USP54-211ENST00000474929 BCL2L13Q9BXK5 485 aa11.11□□□□□ -0.63
USP54-211ENST00000474929 PAPPA2Q9BXP8 1791 aa11.11□□□□□ -0.63
USP54-211ENST00000474929 H7C1D1 291 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 GPR25O00155 361 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 PPIP5K2O43314 1243 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 FKTNO75072 461 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 GMPSP49915 693 aaPredicted RBP11.1□□□□□ -0.63
USP54-211ENST00000474929 KRT26Q7Z3Y9 468 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 SUPT20HQ8NEM7 779 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 CFHR5Q9BXR6 569 aa11.1□□□□□ -0.63
USP54-211ENST00000474929 ZNF330Q9Y3S2 320 aaPredicted RBP11.1□□□□□ -0.63
USP54-211ENST00000474929 KIAA0100Q14667 2235 aaKnown RBP11.09□□□□□ -0.63
USP54-211ENST00000474929 A0A1W2PPC1 479 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 POTEFA5A3E0 1075 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 CAMTA2O94983 1202 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 CDCA8Q53HL2 280 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 ANKRD13DQ6ZTN6 518 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 ZNRF3Q9ULT6 936 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 TBC1D2BQ9UPU7 963 aa11.09□□□□□ -0.63
USP54-211ENST00000474929 SREBF2Q12772 1141 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 OLFM4Q6UX06 510 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 USP48Q86UV5 1035 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 RASAL3Q86YV0 1011 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 DCPSQ96C86 337 aaKnown RBP11.08□□□□□ -0.64
USP54-211ENST00000474929 TESK2Q96S53 571 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 TMEM106CQ9BVX2 250 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 RIC1Q4ADV7 1423 aa11.08□□□□□ -0.64
USP54-211ENST00000474929 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
USP54-211ENST00000474929 CHRDL2Q6WN34 429 aa11.07□□□□□ -0.64
USP54-211ENST00000474929 DZIP3Q86Y13 1208 aaKnown RBP11.07□□□□□ -0.64
USP54-211ENST00000474929 POLKQ9UBT6 870 aa11.07□□□□□ -0.64
USP54-211ENST00000474929 KIF7Q2M1P5 1343 aa11.07□□□□□ -0.64
USP54-211ENST00000474929 GTF2E1P29083 439 aaPredicted RBP11.06□□□□□ -0.64
USP54-211ENST00000474929 CRY2Q49AN0 593 aa11.06□□□□□ -0.64
USP54-211ENST00000474929 SULF1Q8IWU6 871 aa11.06□□□□□ -0.64
USP54-211ENST00000474929 TRPM4Q8TD43 1214 aa11.06□□□□□ -0.64
USP54-211ENST00000474929 RPGRQ92834 1020 aaKnown RBP11.06□□□□□ -0.64
USP54-211ENST00000474929 COL6A3P12111 3177 aa11.06□□□□□ -0.64
USP54-211ENST00000474929 H0YGN5 161 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 TBC1D8O95759 1140 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 HIRAP54198 1017 aaPredicted RBP11.05□□□□□ -0.64
USP54-211ENST00000474929 CXCL9Q07325 125 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 SLC39A6Q13433 755 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 ARMC5Q96C12 935 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 NYXQ9GZU5 481 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 CNOT7Q9UIV1 285 aaKnown RBP11.05□□□□□ -0.64
USP54-211ENST00000474929 TRIM17Q9Y577 477 aa11.05□□□□□ -0.64
USP54-211ENST00000474929 HEG1Q9ULI3 1381 aa11.04□□□□□ -0.64
USP54-211ENST00000474929 PPEF1O14829 653 aaPredicted RBP11.04□□□□□ -0.64
USP54-211ENST00000474929 AOC3Q16853 763 aa11.04□□□□□ -0.64
USP54-211ENST00000474929 GPR153Q6NV75 609 aa11.04□□□□□ -0.64
USP54-211ENST00000474929 DPF2Q92785 391 aa11.04□□□□□ -0.64
USP54-211ENST00000474929 RNMTO43148 476 aaKnown RBP11.03□□□□□ -0.64
USP54-211ENST00000474929 TM4SF4P48230 202 aa11.03□□□□□ -0.64
USP54-211ENST00000474929 MICALL2Q8IY33 904 aa11.03□□□□□ -0.64
USP54-211ENST00000474929 ERO1AQ96HE7 468 aa11.03□□□□□ -0.64
USP54-211ENST00000474929 RBM27Q9P2N5 1060 aaKnown RBP11.03□□□□□ -0.64
USP54-211ENST00000474929 NIP7Q9Y221 180 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP54-211ENST00000474929 HTTP42858 3142 aa11.02□□□□□ -0.64
USP54-211ENST00000474929 EN2P19622 333 aaPredicted RBP11.02□□□□□ -0.65
USP54-211ENST00000474929 RPS12P25398 132 aaKnown RBP11.02□□□□□ -0.65
USP54-211ENST00000474929 HOXA10P31260 410 aaPredicted RBP11.02□□□□□ -0.65
USP54-211ENST00000474929 OTOP1Q7RTM1 612 aa11.02□□□□□ -0.65
USP54-211ENST00000474929 RBM17Q96I25 401 aaKnown RBP11.02□□□□□ -0.65
USP54-211ENST00000474929 CRAMP1Q96RY5 1269 aa11.02□□□□□ -0.65
USP54-211ENST00000474929 IBTKQ9P2D0 1353 aaPredicted RBP11.02□□□□□ -0.65
USP54-211ENST00000474929 ZNF609O15014 1411 aa11.01□□□□□ -0.65
USP54-211ENST00000474929 KIAA2012Q0VF49 1180 aa11.01□□□□□ -0.65
USP54-211ENST00000474929 NBPF11Q86T75 865 aa11.01□□□□□ -0.65
USP54-211ENST00000474929 ZNF496Q96IT1 587 aaPredicted RBP11.01□□□□□ -0.65
USP54-211ENST00000474929 FMNL2Q96PY5 1086 aa11.01□□□□□ -0.65
USP54-211ENST00000474929 COL25A1Q9BXS0 654 aaPredicted RBP11.01□□□□□ -0.65
USP54-211ENST00000474929 RTFDC1Q9BY42 306 aaPredicted RBP11.01□□□□□ -0.65
USP54-211ENST00000474929 RANBP2P49792 3224 aaKnown RBP11.01□□□□□ -0.65
USP54-211ENST00000474929 ADM5C9JUS6 153 aa11□□□□□ -0.65
USP54-211ENST00000474929 ARHGEF6Q15052 776 aa11□□□□□ -0.65
USP54-211ENST00000474929 CDCA5Q96FF9 252 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms