RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 C4AP0C0L4 1744 aa12.79□□□□□ -0.36
PRPF38A-202ENST00000474048 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 CAMTA2O94983 1202 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 NBPF7P0C2Y1 421 aaPredicted RBP12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 EN1Q05925 392 aaPredicted RBP12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 TRIM28Q13263 835 aaKnown RBP12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 OS9Q13438 667 aaPredicted RBP12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 HLFQ16534 295 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 USPL1Q5W0Q7 1092 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 CEP85Q6P2H3 762 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 GCC1Q96CN9 775 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 ISCA1Q9BUE6 129 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 NYXQ9GZU5 481 aa12.78□□□□□ -0.36
PRPF38A-202ENST00000474048 FAM177BA6PVY3 158 aa12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 SRGAP3O43295 1099 aa12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 PCCAP05165 728 aaPredicted RBP12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 HSP90AB4PQ58FF6 505 aa12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 RTL5Q5HYW3 569 aaPredicted RBP12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 ZBTB38Q8NAP3 1195 aaPredicted RBP12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 ARHGEF1Q92888 912 aaKnown RBP12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 SETDB2Q96T68 719 aa12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 UTP14AQ9BVJ6 771 aaKnown RBP12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 UTYO14607 1347 aa12.77□□□□□ -0.37
PRPF38A-202ENST00000474048 EZH2Q15910 746 aaKnown RBP12.76□□□□□ -0.37
PRPF38A-202ENST00000474048 BICDL1Q6ZP65 573 aa12.76□□□□□ -0.37
PRPF38A-202ENST00000474048 NLRP10Q86W26 655 aa12.76□□□□□ -0.37
PRPF38A-202ENST00000474048 SH3TC1Q8TE82 1336 aa12.76□□□□□ -0.37
PRPF38A-202ENST00000474048 USP42Q9H9J4 1324 aaKnown RBP12.76□□□□□ -0.37
PRPF38A-202ENST00000474048 ATP8B2P98198 1209 aa12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 TAF7LQ5H9L4 462 aa12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 NBPF5PQ86XG9 351 aaPredicted RBP12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 ZNF34Q8IZ26 560 aa12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 SUCLG2Q96I99 432 aa12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 BICC1Q9H694 974 aaKnown RBP12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 SRP68Q9UHB9 627 aaKnown RBP12.75□□□□□ -0.37
PRPF38A-202ENST00000474048 MYH3P11055 1940 aa12.74□□□□□ -0.37
PRPF38A-202ENST00000474048 CARMIL3Q8ND23 1372 aa12.74□□□□□ -0.37
PRPF38A-202ENST00000474048 CDHR2Q9BYE9 1310 aa12.74□□□□□ -0.37
PRPF38A-202ENST00000474048 H7C1W4 665 aa12.74□□□□□ -0.37
PRPF38A-202ENST00000474048 KDM2BQ8NHM5 1336 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 IRS4O14654 1257 aaPredicted RBP12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 IGHDP01880 384 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 CCDC57Q2TAC2 916 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 ERC1Q8IUD2 1116 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 PROM2Q8N271 834 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 FAM89AQ96GI7 184 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 CAMKK2Q96RR4 588 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 BCL11AQ9H165 835 aa12.73□□□□□ -0.37
PRPF38A-202ENST00000474048 TUBGCP6Q96RT7 1819 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 LAMB2P55268 1798 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 UBN2Q6ZU65 1347 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 APBB1O00213 710 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 PDE8AO60658 829 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 SURF6O75683 361 aaKnown RBP12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 ST5P78524 1137 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 G3BP1Q13283 466 aaKnown RBP eCLIP12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 ZNF827Q17R98 1081 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 ANKRD45Q5TZF3 282 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 TBC1D9BQ66K14 1250 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 TPTE2Q6XPS3 522 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 DEFB132Q7Z7B7 95 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 AKT1S1Q96B36 256 aa12.72□□□□□ -0.37
PRPF38A-202ENST00000474048 QSER1Q2KHR3 1735 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 RAB11FIP3O75154 756 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 MTX1Q13505 466 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 SLC15A2Q16348 729 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 SUSD4Q5VX71 490 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 LMBR1LQ6UX01 489 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 SMIM5Q71RC9 77 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 NLGN1Q8N2Q7 840 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 CNBD1Q8NA66 436 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 SSH3Q8TE77 659 aa12.71□□□□□ -0.37
PRPF38A-202ENST00000474048 COL24A1Q17RW2 1714 aa12.71□□□□□ -0.38
PRPF38A-202ENST00000474048 PNMA6EA0A0J9YXQ4 647 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 CTSWP56202 376 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 IFIT5Q13325 482 aaKnown RBP12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 CCDC152Q4G0S7 254 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 SMC5Q8IY18 1101 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 LRRCC1Q9C099 1032 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 DCTPP1Q9H773 170 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 EXOC6BQ9Y2D4 811 aa12.7□□□□□ -0.38
PRPF38A-202ENST00000474048 EP400Q96L91 3159 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 ANKRD18BA2A2Z9 1011 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 NPM3O75607 178 aaKnown RBP12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 NTSR2O95665 410 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 GYS1P13807 737 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 RGS3P49796 1198 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 CHD1LQ86WJ1 897 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 SIRT2Q8IXJ6 389 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 PLA2G12BQ9BX93 195 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 PDZRN3Q9UPQ7 1066 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 PARP3Q9Y6F1 533 aa12.69□□□□□ -0.38
PRPF38A-202ENST00000474048 CASP7P55210 303 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 POLA2Q14181 598 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 RABL6Q3YEC7 729 aaPredicted RBP12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 NUTM1Q86Y26 1132 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 KIF1BPQ96EK5 621 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 GPATCH3Q96I76 525 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 NLRP3Q96P20 1036 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms