RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ZNF784Q8NCA9 323 aaPredicted RBP18.24■□□□□ 0.51
VAMP4-203ENST00000474047 C21orf2O43822 256 aa18.23■□□□□ 0.51
VAMP4-203ENST00000474047 ZNF428Q96B54 188 aa18.23■□□□□ 0.51
VAMP4-203ENST00000474047 NLRP3Q96P20 1036 aa18.23■□□□□ 0.51
VAMP4-203ENST00000474047 RNF123Q5XPI4 1314 aa18.23■□□□□ 0.51
VAMP4-203ENST00000474047 KLRG2A4D1S0 409 aaPredicted RBP18.23■□□□□ 0.51
VAMP4-203ENST00000474047 ALDH1B1P30837 517 aa18.23■□□□□ 0.51
VAMP4-203ENST00000474047 PRPF40BQ6NWY9 871 aaKnown RBP18.23■□□□□ 0.51
VAMP4-203ENST00000474047 ABCC12Q96J65 1359 aa18.22■□□□□ 0.51
VAMP4-203ENST00000474047 SH3TC1Q8TE82 1336 aa18.22■□□□□ 0.51
VAMP4-203ENST00000474047 ANKRD36CQ5JPF3 1778 aa18.22■□□□□ 0.51
VAMP4-203ENST00000474047 VAMP4O75379 141 aa18.22■□□□□ 0.51
VAMP4-203ENST00000474047 COL11A2P13942 1736 aaPredicted RBP18.22■□□□□ 0.51
VAMP4-203ENST00000474047 SOGA3Q5TF21 947 aa18.21■□□□□ 0.51
VAMP4-203ENST00000474047 MYD88Q99836 296 aa18.21■□□□□ 0.51
VAMP4-203ENST00000474047 ZNF521Q96K83 1311 aa18.21■□□□□ 0.51
VAMP4-203ENST00000474047 E9PSI1 815 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 C9orf131Q5VYM1 1079 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 RBM17Q96I25 401 aaKnown RBP18.2■□□□□ 0.5
VAMP4-203ENST00000474047 ISCA1Q9BUE6 129 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 MAP3K2Q9Y2U5 619 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 GOLGB1Q14789 3259 aaKnown RBP18.2■□□□□ 0.5
VAMP4-203ENST00000474047 NEXNQ0ZGT2 675 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 SLC10A5Q5PT55 438 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 KSR2Q6VAB6 950 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 RNF181Q9P0P0 153 aa18.2■□□□□ 0.5
VAMP4-203ENST00000474047 CACNA1SQ13698 1873 aa18.19■□□□□ 0.5
VAMP4-203ENST00000474047 PI4KAP2A4QPH2 592 aa18.19■□□□□ 0.5
VAMP4-203ENST00000474047 HCLS1P14317 486 aaPredicted RBP18.19■□□□□ 0.5
VAMP4-203ENST00000474047 CRY2Q49AN0 593 aa18.19■□□□□ 0.5
VAMP4-203ENST00000474047 PI4KAP1Q8N8J0 262 aa18.19■□□□□ 0.5
VAMP4-203ENST00000474047 METTL22Q9BUU2 404 aaPredicted RBP18.19■□□□□ 0.5
VAMP4-203ENST00000474047 ARFGEF2Q9Y6D5 1785 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 RASSF7Q02833 373 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 TRIM28Q13263 835 aaKnown RBP18.18■□□□□ 0.5
VAMP4-203ENST00000474047 FKBP5Q13451 457 aaPredicted RBP18.18■□□□□ 0.5
VAMP4-203ENST00000474047 RTL5Q5HYW3 569 aaPredicted RBP18.18■□□□□ 0.5
VAMP4-203ENST00000474047 SYNE4Q8N205 404 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 ZNF526Q8TF50 670 aaPredicted RBP18.18■□□□□ 0.5
VAMP4-203ENST00000474047 FAM89AQ96GI7 184 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 SLX4Q8IY92 1834 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 FLIIQ13045 1269 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 G2E3Q7L622 706 aa18.18■□□□□ 0.5
VAMP4-203ENST00000474047 TMX4Q9H1E5 349 aaPredicted RBP18.18■□□□□ 0.5
VAMP4-203ENST00000474047 RIC1Q4ADV7 1423 aa18.17■□□□□ 0.5
VAMP4-203ENST00000474047 LMNB1P20700 586 aa18.17■□□□□ 0.5
VAMP4-203ENST00000474047 CCDC191Q8NCU4 936 aa18.17■□□□□ 0.5
VAMP4-203ENST00000474047 CWC25Q9NXE8 425 aaPredicted RBP18.17■□□□□ 0.5
VAMP4-203ENST00000474047 TNRC6CQ9HCJ0 1690 aaKnown RBP18.16■□□□□ 0.5
VAMP4-203ENST00000474047 HSP90B1P14625 803 aaKnown RBP18.16■□□□□ 0.5
VAMP4-203ENST00000474047 HOXA10P31260 410 aaPredicted RBP18.16■□□□□ 0.5
VAMP4-203ENST00000474047 CCDC93Q567U6 631 aa18.16■□□□□ 0.5
VAMP4-203ENST00000474047 C3orf67Q6ZVT6 689 aa18.16■□□□□ 0.5
VAMP4-203ENST00000474047 CRAMP1Q96RY5 1269 aa18.16■□□□□ 0.5
VAMP4-203ENST00000474047 GPBP1L1Q9HC44 474 aaPredicted RBP18.16■□□□□ 0.5
VAMP4-203ENST00000474047 UTRNP46939 3433 aa18.16■□□□□ 0.5
VAMP4-203ENST00000474047 SLFN5Q08AF3 891 aa18.15■□□□□ 0.5
VAMP4-203ENST00000474047 DDX46Q7L014 1031 aaKnown RBP18.15■□□□□ 0.5
VAMP4-203ENST00000474047 TAOK3Q9H2K8 898 aa18.15■□□□□ 0.5
VAMP4-203ENST00000474047 CACNA1FO60840 1977 aa18.15■□□□□ 0.5
VAMP4-203ENST00000474047 IRS4O14654 1257 aaPredicted RBP18.15■□□□□ 0.5
VAMP4-203ENST00000474047 ZBTB38Q8NAP3 1195 aaPredicted RBP18.15■□□□□ 0.5
VAMP4-203ENST00000474047 NFKBIEO00221 500 aa18.14■□□□□ 0.49
VAMP4-203ENST00000474047 RTKN2Q8IZC4 609 aa18.14■□□□□ 0.49
VAMP4-203ENST00000474047 CDCA7LQ96GN5 454 aa18.14■□□□□ 0.49
VAMP4-203ENST00000474047 PPEF1O14829 653 aaPredicted RBP18.13■□□□□ 0.49
VAMP4-203ENST00000474047 ADCY9O60503 1353 aa18.13■□□□□ 0.49
VAMP4-203ENST00000474047 CC2D2BQ6DHV5 1058 aa18.12■□□□□ 0.49
VAMP4-203ENST00000474047 C7orf43Q8WVR3 580 aa18.12■□□□□ 0.49
VAMP4-203ENST00000474047 DNAAF4Q8WXU2 420 aa18.12■□□□□ 0.49
VAMP4-203ENST00000474047 PCCAP05165 728 aaPredicted RBP18.12■□□□□ 0.49
VAMP4-203ENST00000474047 JARID2Q92833 1246 aaPredicted RBP18.12■□□□□ 0.49
VAMP4-203ENST00000474047 SBF1O95248 1867 aa18.11■□□□□ 0.49
VAMP4-203ENST00000474047 HNRNPUQ00839 825 aaKnown RBP eCLIP18.11■□□□□ 0.49
VAMP4-203ENST00000474047 OLFM4Q6UX06 510 aa18.11■□□□□ 0.49
VAMP4-203ENST00000474047 LTBP3Q9NS15 1303 aa18.11■□□□□ 0.49
VAMP4-203ENST00000474047 BBOX1O75936 387 aa18.1■□□□□ 0.49
VAMP4-203ENST00000474047 IGKV5-2P06315 115 aa18.1■□□□□ 0.49
VAMP4-203ENST00000474047 FKBP4Q02790 459 aaKnown RBP eCLIP18.1■□□□□ 0.49
VAMP4-203ENST00000474047 CWF19L2Q2TBE0 894 aaKnown RBP18.1■□□□□ 0.49
VAMP4-203ENST00000474047 ABCC4O15439 1325 aa18.1■□□□□ 0.49
VAMP4-203ENST00000474047 CCDC88AQ3V6T2 1871 aa18.1■□□□□ 0.49
VAMP4-203ENST00000474047 NEURL1BA8MQ27 555 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 FER1L6Q2WGJ9 1857 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 GRIPAP1Q4V328 841 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 KDM2BQ8NHM5 1336 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 PDE8AO60658 829 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 GRAPQ13588 217 aa18.09■□□□□ 0.49
VAMP4-203ENST00000474047 SF3B3Q15393 1217 aaKnown RBP18.09■□□□□ 0.49
VAMP4-203ENST00000474047 GRAPLQ8TC17 118 aaPredicted RBP18.09■□□□□ 0.49
VAMP4-203ENST00000474047 ZC3H4Q9UPT8 1303 aaKnown RBP18.08■□□□□ 0.48
VAMP4-203ENST00000474047 F6X3S4 739 aa18.08■□□□□ 0.48
VAMP4-203ENST00000474047 PRELPP51888 382 aa18.08■□□□□ 0.48
VAMP4-203ENST00000474047 LINS1Q8NG48 757 aa18.08■□□□□ 0.48
VAMP4-203ENST00000474047 LAMB2P55268 1798 aa18.08■□□□□ 0.48
VAMP4-203ENST00000474047 CCDC152Q4G0S7 254 aa18.07■□□□□ 0.48
VAMP4-203ENST00000474047 DPY19L2Q6NUT2 758 aa18.07■□□□□ 0.48
VAMP4-203ENST00000474047 SLC4A10Q6U841 1118 aa18.07■□□□□ 0.48
VAMP4-203ENST00000474047 ZNF277Q9NRM2 450 aaPredicted RBP18.07■□□□□ 0.48
VAMP4-203ENST00000474047 ATP6V0A2Q9Y487 856 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms