RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 SIL1Q9H173 461 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 MTMR6Q9Y217 621 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 A0A0D9SFI3 127 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 DNM1Q05193 864 aaKnown RBP13.14□□□□□ -0.31
C9orf3-214ENST00000473778 NMIQ13287 307 aaPredicted RBP13.14□□□□□ -0.31
C9orf3-214ENST00000473778 EPHA10Q5JZY3 1008 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 TCEANC2Q96MN5 208 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 PDRG1Q9NUG6 133 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 TPCN1Q9ULQ1 816 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 SMC3Q9UQE7 1217 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 UTYO14607 1347 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 VPS53Q5VIR6 699 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 LINS1Q8NG48 757 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 R3HCC1Q9Y3T6 440 aaKnown RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 RBM8AQ9Y5S9 174 aaKnown RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 NPHP4O75161 1426 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 CHGBP05060 677 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 TPM2P07951 284 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 HCLS1P14317 486 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 SYAP1Q96A49 352 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 EVI5LQ96CN4 794 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 EDC3Q96F86 508 aaKnown RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 USP25Q9UHP3 1055 aa13.13□□□□□ -0.31
C9orf3-214ENST00000473778 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-214ENST00000473778 OVOS2A0A0G2JMS6 1433 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 TRPM3Q9HCF6 1732 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 PIP4K2AP48426 406 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 CREB3L3Q68CJ9 461 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 ANKLE2Q86XL3 938 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 MAP4K1Q92918 833 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 BOLA2Q9H3K6 86 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 UBE2HP62256 183 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 CCDC183Q5T5S1 534 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 ZNF589Q86UQ0 364 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 JARID2Q92833 1246 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 ZNF830Q96NB3 372 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 FUCA2Q9BTY2 467 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 DDX21Q9NR30 783 aaKnown RBP eCLIP13.12□□□□□ -0.31
C9orf3-214ENST00000473778 CYP46A1Q9Y6A2 500 aa13.12□□□□□ -0.31
C9orf3-214ENST00000473778 KDM6AO15550 1401 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-214ENST00000473778 COL15A1P39059 1388 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 FAM173BQ6P4H8 233 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 GIMAP6Q6P9H5 292 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 RUFY2Q8WXA3 655 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 TM6SF1Q9BZW5 370 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 CCDC39Q9UFE4 941 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 PRDM4Q9UKN5 801 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 NDUFB9Q9Y6M9 179 aa13.11□□□□□ -0.31
C9orf3-214ENST00000473778 SLC27A2O14975 620 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 MYL6BP14649 208 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 ERC1Q8IUD2 1116 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 SCN11AQ9UI33 1791 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 AP5Z1O43299 807 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 ERBB3P21860 1342 aa13.1□□□□□ -0.31
C9orf3-214ENST00000473778 NEURL1BA8MQ27 555 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 PHF14O94880 888 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 ZNF790Q6PG37 636 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 CDC37L1Q7L3B6 337 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 SNRKQ9NRH2 765 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 MED23Q9ULK4 1368 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 VPS37CA5D8V6 355 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-214ENST00000473778 FGD1P98174 961 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 LRP10Q7Z4F1 713 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 FERMT3Q86UX7 667 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 GPATCH3Q96I76 525 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 CHMP4AQ9BY43 222 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 MRC1P22897 1456 aa13.09□□□□□ -0.31
C9orf3-214ENST00000473778 ZNF142P52746 1687 aaPredicted RBP13.08□□□□□ -0.31
C9orf3-214ENST00000473778 ZC3H6P61129 1189 aaKnown RBP13.08□□□□□ -0.32
C9orf3-214ENST00000473778 G3BP1Q13283 466 aaKnown RBP eCLIP13.08□□□□□ -0.32
C9orf3-214ENST00000473778 NFATC2IPQ8NCF5 419 aa13.08□□□□□ -0.32
C9orf3-214ENST00000473778 MCM5P33992 734 aa13.08□□□□□ -0.32
C9orf3-214ENST00000473778 TOB2Q14106 344 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-214ENST00000473778 GCKRQ14397 625 aa13.08□□□□□ -0.32
C9orf3-214ENST00000473778 COPS6Q7L5N1 327 aa13.08□□□□□ -0.32
C9orf3-214ENST00000473778 XAGE3Q8WTP9 111 aa13.08□□□□□ -0.32
C9orf3-214ENST00000473778 SH2B1Q9NRF2 756 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-214ENST00000473778 ADCY5O95622 1261 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 RIC3Q7Z5B4 369 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 TTC6Q86TZ1 520 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 C17orf53Q8N3J3 647 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 ZNF496Q96IT1 587 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 FSD1Q9BTV5 496 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 TTC12Q9H892 705 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 JCADQ9P266 1359 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 PTMAP06454 111 aaKnown RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 ZKSCAN1P17029 563 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 ZSCAN31Q96LW9 406 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 MYD88Q99836 296 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 SLC52A2Q9HAB3 445 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 DBNLQ9UJU6 430 aaKnown RBP13.07□□□□□ -0.32
C9orf3-214ENST00000473778 USP16Q9Y5T5 823 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 MEGF6O75095 1541 aa13.07□□□□□ -0.32
C9orf3-214ENST00000473778 NPHP3Q7Z494 1330 aa13.06□□□□□ -0.32
C9orf3-214ENST00000473778 KCNJ4P48050 445 aa13.06□□□□□ -0.32
C9orf3-214ENST00000473778 TERF1P54274 439 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms