RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 SLC4A8Q2Y0W8 1093 aa9.5□□□□□ -0.89
HDAC3-206ENST00000471968 R3HDMLQ9H3Y0 253 aa9.5□□□□□ -0.89
HDAC3-206ENST00000471968 ARFGEF2Q9Y6D5 1785 aa9.5□□□□□ -0.89
HDAC3-206ENST00000471968 EDC4Q6P2E9 1401 aaKnown RBP9.49□□□□□ -0.89
HDAC3-206ENST00000471968 WTIPA6NIX2 430 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-206ENST00000471968 TBC1D9BQ66K14 1250 aa9.49□□□□□ -0.89
HDAC3-206ENST00000471968 LARGE2Q8N3Y3 721 aa9.49□□□□□ -0.89
HDAC3-206ENST00000471968 TRPM4Q8TD43 1214 aa9.49□□□□□ -0.89
HDAC3-206ENST00000471968 COG3Q96JB2 828 aa9.49□□□□□ -0.89
HDAC3-206ENST00000471968 PTPN22Q9Y2R2 807 aa9.49□□□□□ -0.89
HDAC3-206ENST00000471968 ERVV-2B6SEH9 535 aa9.48□□□□□ -0.89
HDAC3-206ENST00000471968 MYCP01106 439 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-206ENST00000471968 HSP90AB2PQ58FF8 381 aa9.48□□□□□ -0.89
HDAC3-206ENST00000471968 HDGFL2Q7Z4V5 671 aaPredicted RBP9.48□□□□□ -0.89
HDAC3-206ENST00000471968 CNBD1Q8NA66 436 aa9.48□□□□□ -0.89
HDAC3-206ENST00000471968 TMC1Q8TDI8 760 aa9.48□□□□□ -0.89
HDAC3-206ENST00000471968 RPTORQ8N122 1335 aa9.48□□□□□ -0.89
HDAC3-206ENST00000471968 ADM5C9JUS6 153 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 TNFRSF10AO00220 468 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 GMPSP49915 693 aaPredicted RBP9.47□□□□□ -0.89
HDAC3-206ENST00000471968 ST5P78524 1137 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 KRT26Q7Z3Y9 468 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 DNAJC10Q8IXB1 793 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 SYMPKQ92797 1274 aaKnown RBP9.47□□□□□ -0.89
HDAC3-206ENST00000471968 ZNF333Q96JL9 665 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 PSMD1Q99460 953 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 STAP2Q9UGK3 403 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 NR2E3Q9Y5X4 410 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 SYNGAP1Q96PV0 1343 aa9.47□□□□□ -0.89
HDAC3-206ENST00000471968 TJP1Q07157 1748 aa9.46□□□□□ -0.89
HDAC3-206ENST00000471968 ZBTB7BO15156 539 aaPredicted RBP9.46□□□□□ -0.9
HDAC3-206ENST00000471968 NPR1P16066 1061 aa9.46□□□□□ -0.9
HDAC3-206ENST00000471968 CABP4P57796 275 aa9.46□□□□□ -0.9
HDAC3-206ENST00000471968 PPARGC1BQ86YN6 1023 aaKnown RBP9.46□□□□□ -0.9
HDAC3-206ENST00000471968 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.46□□□□□ -0.9
HDAC3-206ENST00000471968 ZBTB1Q9Y2K1 713 aa9.46□□□□□ -0.9
HDAC3-206ENST00000471968 A0A1W2PP64 1363 aa9.46□□□□□ -0.9
HDAC3-206ENST00000471968 NIM1KQ8IY84 436 aa9.45□□□□□ -0.9
HDAC3-206ENST00000471968 SHTN1A0MZ66 631 aa9.44□□□□□ -0.9
HDAC3-206ENST00000471968 TM4SF4P48230 202 aa9.44□□□□□ -0.9
HDAC3-206ENST00000471968 BCL2L13Q9BXK5 485 aa9.44□□□□□ -0.9
HDAC3-206ENST00000471968 ANKRD26Q9UPS8 1709 aa9.44□□□□□ -0.9
HDAC3-206ENST00000471968 MRC1P22897 1456 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 NPC1L1Q9UHC9 1359 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 PPEF1O14829 653 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-206ENST00000471968 CXCL9Q07325 125 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 MKRN3Q13064 507 aaKnown RBP9.43□□□□□ -0.9
HDAC3-206ENST00000471968 SLC9C1Q4G0N8 1177 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 HTATIP2Q9BUP3 242 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 CFHR5Q9BXR6 569 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 SLC12A5Q9H2X9 1139 aa9.43□□□□□ -0.9
HDAC3-206ENST00000471968 SNED1Q8TER0 1413 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 TONSLQ96HA7 1378 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 CYP19A1P11511 503 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-206ENST00000471968 NBPF11Q86T75 865 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 ALYREFQ86V81 257 aaKnown RBP9.42□□□□□ -0.9
HDAC3-206ENST00000471968 CD99L2Q8TCZ2 262 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 GUCD1Q96NT3 240 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 SETDB2Q96T68 719 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 EFCC1Q9HA90 598 aa9.42□□□□□ -0.9
HDAC3-206ENST00000471968 CANXP27824 592 aaKnown RBP9.41□□□□□ -0.9
HDAC3-206ENST00000471968 SREBF2Q12772 1141 aa9.41□□□□□ -0.9
HDAC3-206ENST00000471968 DCPSQ96C86 337 aaKnown RBP9.41□□□□□ -0.9
HDAC3-206ENST00000471968 ERO1AQ96HE7 468 aa9.41□□□□□ -0.9
HDAC3-206ENST00000471968 TERF2IPQ9NYB0 399 aa9.41□□□□□ -0.9
HDAC3-206ENST00000471968 CNOT7Q9UIV1 285 aaKnown RBP9.41□□□□□ -0.9
HDAC3-206ENST00000471968 ZBTB12Q9Y330 459 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-206ENST00000471968 ZNF609O15014 1411 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 CDHR2Q9BYE9 1310 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 IRS2Q9Y4H2 1338 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 H7C1D1 291 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 PPIP5K2O43314 1243 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 HSP90AB1P08238 724 aaKnown RBP9.4□□□□□ -0.9
HDAC3-206ENST00000471968 BCAMP50895 628 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 LRIT3Q3SXY7 679 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 SAMD7Q7Z3H4 446 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 NFATC2IPQ8NCF5 419 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 FAM161BQ96MY7 647 aa9.4□□□□□ -0.9
HDAC3-206ENST00000471968 NCAPD2Q15021 1401 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 FLT4P35916 1363 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 WASHC2AQ641Q2 1341 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 ALDH1B1P30837 517 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 AOC3Q16853 763 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 MICALL2Q8IY33 904 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 SHISA4Q96DD7 197 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 CDCA5Q96FF9 252 aa9.39□□□□□ -0.91
HDAC3-206ENST00000471968 A0A087WZG4 1122 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 RAD17O75943 681 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 TBC1D10BQ4KMP7 808 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-206ENST00000471968 MOB2Q70IA6 237 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 MAFAQ8NHW3 353 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-206ENST00000471968 ZNRF3Q9ULT6 936 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 TBC1D2BQ9UPU7 963 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 ZNF330Q9Y3S2 320 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-206ENST00000471968 PTCH2Q9Y6C5 1203 aa9.38□□□□□ -0.91
HDAC3-206ENST00000471968 KLRG2A4D1S0 409 aaPredicted RBP9.37□□□□□ -0.91
HDAC3-206ENST00000471968 EVI5O60447 810 aa9.37□□□□□ -0.91
HDAC3-206ENST00000471968 ALDH1A1P00352 501 aa9.37□□□□□ -0.91
HDAC3-206ENST00000471968 EGFRP00533 1210 aa9.37□□□□□ -0.91
HDAC3-206ENST00000471968 CC2D2BQ6DHV5 1058 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms