RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 WDR63Q8IWG1 891 aa20.26■□□□□ 0.83
HDAC6-218ENST00000470942 FER1L6Q2WGJ9 1857 aa20.25■□□□□ 0.83
HDAC6-218ENST00000470942 LMNB1P20700 586 aa20.25■□□□□ 0.83
HDAC6-218ENST00000470942 ALDH1B1P30837 517 aa20.25■□□□□ 0.83
HDAC6-218ENST00000470942 NLRP10Q86W26 655 aa20.25■□□□□ 0.83
HDAC6-218ENST00000470942 RPGRQ92834 1020 aaKnown RBP20.25■□□□□ 0.83
HDAC6-218ENST00000470942 PHAXQ9H814 394 aaKnown RBP20.25■□□□□ 0.83
HDAC6-218ENST00000470942 NFKBIEO00221 500 aa20.24■□□□□ 0.83
HDAC6-218ENST00000470942 GOLGA2Q08379 1002 aa20.24■□□□□ 0.83
HDAC6-218ENST00000470942 SOGA3Q5TF21 947 aa20.24■□□□□ 0.83
HDAC6-218ENST00000470942 RIC3Q7Z5B4 369 aa20.24■□□□□ 0.83
HDAC6-218ENST00000470942 TRMT112Q9UI30 125 aaKnown RBP20.24■□□□□ 0.83
HDAC6-218ENST00000470942 TWISTNBQ3B726 338 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-218ENST00000470942 ZNF428Q96B54 188 aa20.23■□□□□ 0.83
HDAC6-218ENST00000470942 NLRP3Q96P20 1036 aa20.23■□□□□ 0.83
HDAC6-218ENST00000470942 RIC1Q4ADV7 1423 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 ATP5J2-PTCD1G3V325 749 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 CRY2Q49AN0 593 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 STK31Q9BXU1 1019 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 RNF123Q5XPI4 1314 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 FANCIQ9NVI1 1328 aa20.22■□□□□ 0.83
HDAC6-218ENST00000470942 TCERG1O14776 1098 aaKnown RBP20.21■□□□□ 0.83
HDAC6-218ENST00000470942 PRELPP51888 382 aa20.21■□□□□ 0.83
HDAC6-218ENST00000470942 SLC10A5Q5PT55 438 aa20.21■□□□□ 0.83
HDAC6-218ENST00000470942 RBM17Q96I25 401 aaKnown RBP20.21■□□□□ 0.83
HDAC6-218ENST00000470942 TAOK3Q9H2K8 898 aa20.21■□□□□ 0.83
HDAC6-218ENST00000470942 HCLS1P14317 486 aaPredicted RBP20.2■□□□□ 0.82
HDAC6-218ENST00000470942 C1QTNF8P60827 252 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 CCDC93Q567U6 631 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 C3orf67Q6ZVT6 689 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 SYNE4Q8N205 404 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 C7orf43Q8WVR3 580 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 ISCA1Q9BUE6 129 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 SH3TC1Q8TE82 1336 aa20.2■□□□□ 0.82
HDAC6-218ENST00000470942 DICER1Q9UPY3 1922 aaKnown RBP20.19■□□□□ 0.82
HDAC6-218ENST00000470942 LAMB2P55268 1798 aa20.19■□□□□ 0.82
HDAC6-218ENST00000470942 DDX58O95786 925 aaKnown RBP20.19■□□□□ 0.82
HDAC6-218ENST00000470942 TIAM2Q8IVF5 1701 aa20.19■□□□□ 0.82
HDAC6-218ENST00000470942 HOXA10P31260 410 aaPredicted RBP20.18■□□□□ 0.82
HDAC6-218ENST00000470942 EXOSC9Q06265 439 aaKnown RBP20.18■□□□□ 0.82
HDAC6-218ENST00000470942 OLFM4Q6UX06 510 aa20.18■□□□□ 0.82
HDAC6-218ENST00000470942 MYD88Q99836 296 aa20.18■□□□□ 0.82
HDAC6-218ENST00000470942 LTBP3Q9NS15 1303 aa20.18■□□□□ 0.82
HDAC6-218ENST00000470942 CRAMP1Q96RY5 1269 aa20.17■□□□□ 0.82
HDAC6-218ENST00000470942 MYH16Q9H6N6 1097 aa20.17■□□□□ 0.82
HDAC6-218ENST00000470942 SPINK5Q9NQ38 1064 aaPredicted RBP20.17■□□□□ 0.82
HDAC6-218ENST00000470942 KDM2BQ8NHM5 1336 aa20.17■□□□□ 0.82
HDAC6-218ENST00000470942 SLC4A2P04920 1241 aa20.16■□□□□ 0.82
HDAC6-218ENST00000470942 RTKN2Q8IZC4 609 aa20.16■□□□□ 0.82
HDAC6-218ENST00000470942 FAM89AQ96GI7 184 aa20.16■□□□□ 0.82
HDAC6-218ENST00000470942 NMRK2Q9NPI5 230 aa20.16■□□□□ 0.82
HDAC6-218ENST00000470942 ZC3H4Q9UPT8 1303 aaKnown RBP20.16■□□□□ 0.82
HDAC6-218ENST00000470942 CCER2I3L3R5 266 aa20.15■□□□□ 0.82
HDAC6-218ENST00000470942 KIF3CO14782 793 aa20.15■□□□□ 0.82
HDAC6-218ENST00000470942 TRIM28Q13263 835 aaKnown RBP20.15■□□□□ 0.82
HDAC6-218ENST00000470942 RTL5Q5HYW3 569 aaPredicted RBP20.15■□□□□ 0.82
HDAC6-218ENST00000470942 CACNA1FO60840 1977 aa20.15■□□□□ 0.82
HDAC6-218ENST00000470942 DDX60Q8IY21 1712 aaKnown RBP20.14■□□□□ 0.81
HDAC6-218ENST00000470942 PPEF1O14829 653 aaPredicted RBP20.14■□□□□ 0.81
HDAC6-218ENST00000470942 VAMP4O75379 141 aa20.14■□□□□ 0.81
HDAC6-218ENST00000470942 FKBP4Q02790 459 aaKnown RBP eCLIP20.14■□□□□ 0.81
HDAC6-218ENST00000470942 METTL22Q9BUU2 404 aaPredicted RBP20.14■□□□□ 0.81
HDAC6-218ENST00000470942 MAP3K2Q9Y2U5 619 aa20.14■□□□□ 0.81
HDAC6-218ENST00000470942 PI4KAP2A4QPH2 592 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 CC2D2BQ6DHV5 1058 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 KSR2Q6VAB6 950 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 DDX46Q7L014 1031 aaKnown RBP20.13■□□□□ 0.81
HDAC6-218ENST00000470942 G2E3Q7L622 706 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 PI4KAP1Q8N8J0 262 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 TMX4Q9H1E5 349 aaPredicted RBP20.13■□□□□ 0.81
HDAC6-218ENST00000470942 RRAGCQ9HB90 399 aa20.13■□□□□ 0.81
HDAC6-218ENST00000470942 ABCC4O15439 1325 aa20.12■□□□□ 0.81
HDAC6-218ENST00000470942 GLTPD2A6NH11 291 aa20.12■□□□□ 0.81
HDAC6-218ENST00000470942 ZNF277Q9NRM2 450 aaPredicted RBP20.12■□□□□ 0.81
HDAC6-218ENST00000470942 TAF1P21675 1872 aa20.11■□□□□ 0.81
HDAC6-218ENST00000470942 IRS4O14654 1257 aaPredicted RBP20.11■□□□□ 0.81
HDAC6-218ENST00000470942 DPY19L2Q6NUT2 758 aa20.11■□□□□ 0.81
HDAC6-218ENST00000470942 CCDC191Q8NCU4 936 aa20.11■□□□□ 0.81
HDAC6-218ENST00000470942 CWC25Q9NXE8 425 aaPredicted RBP20.11■□□□□ 0.81
HDAC6-218ENST00000470942 ZNF521Q96K83 1311 aa20.1■□□□□ 0.81
HDAC6-218ENST00000470942 NEXNQ0ZGT2 675 aa20.1■□□□□ 0.81
HDAC6-218ENST00000470942 FLIIQ13045 1269 aa20.1■□□□□ 0.81
HDAC6-218ENST00000470942 C16orf71Q8IYS4 520 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-218ENST00000470942 ZBTB38Q8NAP3 1195 aaPredicted RBP20.1■□□□□ 0.81
HDAC6-218ENST00000470942 BBOX1O75936 387 aa20.09■□□□□ 0.81
HDAC6-218ENST00000470942 SLC51AQ86UW1 340 aa20.09■□□□□ 0.81
HDAC6-218ENST00000470942 JARID2Q92833 1246 aaPredicted RBP20.09■□□□□ 0.81
HDAC6-218ENST00000470942 PCCAP05165 728 aaPredicted RBP20.08■□□□□ 0.81
HDAC6-218ENST00000470942 HSP90B1P14625 803 aaKnown RBP20.08■□□□□ 0.81
HDAC6-218ENST00000470942 IARSP41252 1262 aaKnown RBP20.08■□□□□ 0.81
HDAC6-218ENST00000470942 FKBP5Q13451 457 aaPredicted RBP20.08■□□□□ 0.81
HDAC6-218ENST00000470942 GRAPQ13588 217 aa20.08■□□□□ 0.81
HDAC6-218ENST00000470942 GRIPAP1Q4V328 841 aa20.08■□□□□ 0.81
HDAC6-218ENST00000470942 GRAPLQ8TC17 118 aaPredicted RBP20.08■□□□□ 0.81
HDAC6-218ENST00000470942 PSMD1Q99460 953 aa20.08■□□□□ 0.81
HDAC6-218ENST00000470942 ATP6V0A2Q9Y487 856 aa20.08■□□□□ 0.81
HDAC6-218ENST00000470942 TOMM70O94826 608 aa20.07■□□□□ 0.8
HDAC6-218ENST00000470942 SF3B3Q15393 1217 aaKnown RBP20.07■□□□□ 0.8
HDAC6-218ENST00000470942 DIEXFQ68CQ4 756 aaKnown RBP20.07■□□□□ 0.8
HDAC6-218ENST00000470942 IGKV5-2P06315 115 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms