RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	FTSJ3	Q8IY81	847 aa	Known RBP	29.04	■■■□□ 2.24
SREBF1-208	ENST00000469356	TRMT112	Q9UI30	125 aa	Known RBP	29.04	■■■□□ 2.24
SREBF1-208	ENST00000469356	UBN2	Q6ZU65	1347 aa		29.04	■■■□□ 2.24
SREBF1-208	ENST00000469356	FAM177B	A6PVY3	158 aa		29.03	■■■□□ 2.24
SREBF1-208	ENST00000469356	BEND3	Q5T5X7	828 aa		29.03	■■■□□ 2.24
SREBF1-208	ENST00000469356	SUSD4	Q5VX71	490 aa		29.03	■■■□□ 2.24
SREBF1-208	ENST00000469356	AFDN	P55196	1824 aa	Known RBP	29.03	■■■□□ 2.24
SREBF1-208	ENST00000469356	NEURL1B	A8MQ27	555 aa		29.02	■■■□□ 2.24
SREBF1-208	ENST00000469356	TRIM27	P14373	513 aa		29.02	■■■□□ 2.24
SREBF1-208	ENST00000469356	IGKV5-2	P06315	115 aa		29.01	■■■□□ 2.23
SREBF1-208	ENST00000469356	CENPB	P07199	599 aa	Predicted RBP	29.01	■■■□□ 2.23
SREBF1-208	ENST00000469356	DZIP1L	Q8IYY4	767 aa	Known RBP	29	■■■□□ 2.23
SREBF1-208	ENST00000469356	SH3TC1	Q8TE82	1336 aa		29	■■■□□ 2.23
SREBF1-208	ENST00000469356	CWF19L2	Q2TBE0	894 aa	Known RBP	28.99	■■■□□ 2.23
SREBF1-208	ENST00000469356	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	28.99	■■■□□ 2.23
SREBF1-208	ENST00000469356	NTSR2	O95665	410 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	GCKR	Q14397	625 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	PRR5L	Q6MZQ0	368 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	C9orf78	Q9NZ63	289 aa	Predicted RBP	28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	PDZRN3	Q9UPQ7	1066 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	NRXN2	Q9P2S2	1712 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	ABCC4	O15439	1325 aa		28.98	■■■□□ 2.23
SREBF1-208	ENST00000469356	PCCA	P05165	728 aa	Predicted RBP	28.97	■■■□□ 2.23
SREBF1-208	ENST00000469356	CLUAP1	Q96AJ1	413 aa		28.97	■■■□□ 2.23
SREBF1-208	ENST00000469356	INTS3	Q68E01	1043 aa	Known RBP	28.96	■■■□□ 2.23
SREBF1-208	ENST00000469356	HDAC5	Q9UQL6	1122 aa		28.96	■■■□□ 2.23
SREBF1-208	ENST00000469356	LRP5	O75197	1615 aa		28.95	■■■□□ 2.23
SREBF1-208	ENST00000469356	BRIP1	Q9BX63	1249 aa		28.95	■■■□□ 2.23
SREBF1-208	ENST00000469356	CD2AP	Q9Y5K6	639 aa		28.95	■■■□□ 2.23
SREBF1-208	ENST00000469356	PDE6B	P35913	854 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	PDE3A	Q14432	1141 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	ERFE	Q4G0M1	354 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	SLC10A5	Q5PT55	438 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	NUTM1	Q86Y26	1132 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	KLHL34	Q8N239	644 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	FAM89A	Q96GI7	184 aa		28.94	■■■□□ 2.22
SREBF1-208	ENST00000469356	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.93	■■■□□ 2.22
SREBF1-208	ENST00000469356	GRM8	O00222	908 aa		28.93	■■■□□ 2.22
SREBF1-208	ENST00000469356	RRP1	P56182	461 aa	Known RBP	28.93	■■■□□ 2.22
SREBF1-208	ENST00000469356	NLRP3	Q96P20	1036 aa		28.93	■■■□□ 2.22
SREBF1-208	ENST00000469356	CDHR2	Q9BYE9	1310 aa		28.92	■■■□□ 2.22
SREBF1-208	ENST00000469356		H7C1W4	665 aa		28.92	■■■□□ 2.22
SREBF1-208	ENST00000469356	CHMP4B	Q9H444	224 aa	Known RBP	28.92	■■■□□ 2.22
SREBF1-208	ENST00000469356	C10orf71	Q711Q0	1435 aa		28.91	■■■□□ 2.22
SREBF1-208	ENST00000469356	IRS4	O14654	1257 aa	Predicted RBP	28.91	■■■□□ 2.22
SREBF1-208	ENST00000469356	PLIN1	O60240	522 aa		28.91	■■■□□ 2.22
SREBF1-208	ENST00000469356	TGFB2	P61812	414 aa		28.91	■■■□□ 2.22
SREBF1-208	ENST00000469356	RIC1	Q4ADV7	1423 aa		28.9	■■■□□ 2.22
SREBF1-208	ENST00000469356	RTL5	Q5HYW3	569 aa	Predicted RBP	28.9	■■■□□ 2.22
SREBF1-208	ENST00000469356	UBE3B	Q7Z3V4	1068 aa		28.9	■■■□□ 2.22
SREBF1-208	ENST00000469356	TMEM57	Q8N5G2	664 aa		28.9	■■■□□ 2.22
SREBF1-208	ENST00000469356	ITPRIP	Q8IWB1	547 aa		28.89	■■■□□ 2.21
SREBF1-208	ENST00000469356	KIF13B	Q9NQT8	1826 aa		28.88	■■■□□ 2.21
SREBF1-208	ENST00000469356	PDE8A	O60658	829 aa		28.88	■■■□□ 2.21
SREBF1-208	ENST00000469356	GNAI3	P08754	354 aa		28.88	■■■□□ 2.21
SREBF1-208	ENST00000469356	CCDC24	Q8N4L8	307 aa		28.88	■■■□□ 2.21
SREBF1-208	ENST00000469356	TNN	Q9UQP3	1299 aa		28.88	■■■□□ 2.21
SREBF1-208	ENST00000469356		H0YIN7	160 aa		28.87	■■■□□ 2.21
SREBF1-208	ENST00000469356	UTY	O14607	1347 aa		28.86	■■■□□ 2.21
SREBF1-208	ENST00000469356	HCLS1	P14317	486 aa	Predicted RBP	28.86	■■■□□ 2.21
SREBF1-208	ENST00000469356	PANK1	Q8TE04	598 aa		28.86	■■■□□ 2.21
SREBF1-208	ENST00000469356	SUPT16H	Q9Y5B9	1047 aa	Known RBP	28.86	■■■□□ 2.21
SREBF1-208	ENST00000469356	UBTFL1	P0CB47	393 aa	Predicted RBP	28.85	■■■□□ 2.21
SREBF1-208	ENST00000469356	FHDC1	Q9C0D6	1143 aa	Predicted RBP	28.85	■■■□□ 2.21
SREBF1-208	ENST00000469356	USP44	Q9H0E7	712 aa		28.85	■■■□□ 2.21
SREBF1-208	ENST00000469356	DDX19B	Q9UMR2	479 aa		28.85	■■■□□ 2.21
SREBF1-208	ENST00000469356	ABCC12	Q96J65	1359 aa		28.85	■■■□□ 2.21
SREBF1-208	ENST00000469356	PLA2G12B	Q9BX93	195 aa		28.84	■■■□□ 2.21
SREBF1-208	ENST00000469356	KLRG2	A4D1S0	409 aa	Predicted RBP	28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	RLBP1	P12271	317 aa		28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	MVP	Q14764	893 aa	Known RBP	28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	C2CD5	Q86YS7	1000 aa		28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	SYNE4	Q8N205	404 aa		28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	JARID2	Q92833	1246 aa	Predicted RBP	28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	RPGR	Q92834	1020 aa	Known RBP	28.83	■■■□□ 2.21
SREBF1-208	ENST00000469356	CASP7	P55210	303 aa		28.82	■■■□□ 2.2
SREBF1-208	ENST00000469356	ANKRD31	Q8N7Z5	1873 aa		28.82	■■■□□ 2.2
SREBF1-208	ENST00000469356	LAMB2	P55268	1798 aa		28.82	■■■□□ 2.2
SREBF1-208	ENST00000469356	NBPF7	P0C2Y1	421 aa	Predicted RBP	28.81	■■■□□ 2.2
SREBF1-208	ENST00000469356	CCDC152	Q4G0S7	254 aa		28.81	■■■□□ 2.2
SREBF1-208	ENST00000469356	SYT17	Q9BSW7	474 aa		28.81	■■■□□ 2.2
SREBF1-208	ENST00000469356	MYH3	P11055	1940 aa		28.81	■■■□□ 2.2
SREBF1-208	ENST00000469356	NPR1	P16066	1061 aa		28.8	■■■□□ 2.2
SREBF1-208	ENST00000469356	SF3B3	Q15393	1217 aa	Known RBP	28.8	■■■□□ 2.2
SREBF1-208	ENST00000469356	MASTL	Q96GX5	879 aa		28.8	■■■□□ 2.2
SREBF1-208	ENST00000469356	RBM17	Q96I25	401 aa	Known RBP	28.8	■■■□□ 2.2
SREBF1-208	ENST00000469356	COG6	Q9Y2V7	657 aa		28.8	■■■□□ 2.2
SREBF1-208	ENST00000469356	DDX60	Q8IY21	1712 aa	Known RBP	28.79	■■■□□ 2.2
SREBF1-208	ENST00000469356	SRGN	P10124	158 aa		28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	ALDH1B1	P30837	517 aa		28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	CTSW	P56202	376 aa		28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	CRY2	Q49AN0	593 aa		28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	STYK1	Q6J9G0	422 aa		28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	DDX46	Q7L014	1031 aa	Known RBP	28.78	■■■□□ 2.2
SREBF1-208	ENST00000469356	DPEP1	P16444	411 aa		28.77	■■■□□ 2.2
SREBF1-208	ENST00000469356	CNKSR1	Q969H4	720 aa		28.77	■■■□□ 2.2
SREBF1-208	ENST00000469356	ZNF622	Q969S3	477 aa	Known RBP eCLIP	28.77	■■■□□ 2.2	7e-8	■■■□□ 18.2
SREBF1-208	ENST00000469356	MEIS3	Q99687	375 aa		28.77	■■■□□ 2.2
SREBF1-208	ENST00000469356	PIM2	Q9P1W9	311 aa		28.77	■■■□□ 2.2
SREBF1-208	ENST00000469356		A0A0G2JLW4	131 aa		28.76	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms