RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 XAGE2Q96GT9 111 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 TRIM47Q96LD4 638 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 NLRP3Q96P20 1036 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 PURBQ96QR8 312 aaKnown RBP5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 SENP2Q9HC62 589 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 HRH3Q9Y5N1 445 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 ARHGEF40Q8TER5 1519 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 TONSLQ96HA7 1378 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 EIF2AK4Q9P2K8 1649 aaKnown RBP5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 UNC13BO14795 1591 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 GPC1P35052 558 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 PDE4CQ08493 712 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 SWI5Q1ZZU3 235 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 ZNF326Q5BKZ1 582 aaKnown RBP5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 C6orf118Q5T5N4 469 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 L3MBTL2Q969R5 705 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 SLC4A9Q96Q91 983 aa5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 INSM2Q96T92 566 aaPredicted RBP5.81□□□□□ -1.48
TMEM39A-204ENST00000468545 ZMYM3Q14202 1370 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 AGLP35573 1532 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 KDM5DQ9BY66 1539 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 SIGLEC1Q9BZZ2 1709 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 CFAP65Q6ZU64 1925 aaKnown RBP5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 TMEM88BA6NKF7 163 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 RNF144AP50876 292 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 MTFR1Q15390 333 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 TLR1Q15399 786 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 LCE2AQ5TA79 106 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 DCAF11Q8TEB1 546 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 ZFP42Q96MM3 310 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 FHDC1Q9C0D6 1143 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 POLMQ9NP87 494 aaPredicted RBP5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 SERTAD1Q9UHV2 236 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 IQGAP3Q86VI3 1631 aa5.8□□□□□ -1.48
TMEM39A-204ENST00000468545 CEP152O94986 1710 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 ABCC3O15438 1527 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 MROH1Q8NDA8 1641 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 A6NJY4 79 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 WFS1O76024 890 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 CTSOP43234 321 aaPredicted RBP5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 SMTNP53814 917 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 EPHA4P54764 986 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 CENPCQ03188 943 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 IDI1Q13907 227 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 FOXD4L5Q5VV16 416 aaPredicted RBP5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 HOMEZQ8IX15 550 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 TSEN2Q8NCE0 465 aaKnown RBP5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 RNF217Q8TC41 542 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 KIFC2Q96AC6 838 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 CCDC144AA2RUR9 1427 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 REREQ9P2R6 1566 aa5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 CLTCQ00610 1675 aaKnown RBP5.79□□□□□ -1.48
TMEM39A-204ENST00000468545 SOS2Q07890 1332 aaPredicted RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 PLA2R1Q13018 1463 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 DEPDC5O75140 1603 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 RNF17Q9BXT8 1623 aaKnown RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 TTLL8A6PVC2 850 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 FOXK2Q01167 660 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 NPATQ14207 1427 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 SLC27A3Q5K4L6 730 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 TNS4Q8IZW8 715 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 VWDEQ8N2E2 1590 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 NBPF15Q8N660 670 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 CLP1Q92989 425 aaKnown RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 ZSCAN10Q96SZ4 725 aaPredicted RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 HINFPQ9BQA5 517 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 SCHIP1Q9P0W5 487 aaPredicted RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 E9PCH4 1651 aa5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 PRDM15P57071 1507 aaPredicted RBP5.78□□□□□ -1.48
TMEM39A-204ENST00000468545 CDK2AP1O14519 115 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 GTF2E1P29083 439 aaPredicted RBP5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 NFX1Q12986 1120 aaKnown RBP5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 GRIP2Q9C0E4 1043 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 SLC52A1Q9NWF4 448 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 IQSEC3Q9UPP2 1182 aaPredicted RBP5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 TET3O43151 1660 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 LMTK2Q8IWU2 1503 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 BCORL1Q5H9F3 1711 aa5.77□□□□□ -1.49
TMEM39A-204ENST00000468545 PTPRTO14522 1441 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 EFCAB6Q5THR3 1501 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 TERTO14746 1132 aaKnown RBP5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 TMEM214Q6NUQ4 689 aaKnown RBP5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 SLC9A9Q8IVB4 645 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 RHBDD1Q8TEB9 315 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 TSPAN10Q9H1Z9 355 aaPredicted RBP5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 CAMSAP1Q5T5Y3 1602 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 RPRD2Q5VT52 1461 aaKnown RBP5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 UGGT1Q9NYU2 1555 aa5.76□□□□□ -1.49
TMEM39A-204ENST00000468545 ARHGAP31Q2M1Z3 1444 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 CNTLNQ9NXG0 1405 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 SPATA31C2B4DYI2 1134 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 IGFBP4P22692 258 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 WEE1P30291 646 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 OCLNQ16625 522 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 NBPF8Q3BBV2 869 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 GNASQ5JWF2 1037 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 B4GALNT3Q6L9W6 998 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 LYSMD3Q7Z3D4 306 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 GAS2L2Q8NHY3 880 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 HIRIP3Q9BW71 556 aaPredicted RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms